Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006642.1 Length=14286 Score E Sequences producing significant alignments: (Bits) Value seq1147 181 1e-41 >seq1147 Length=47394 Score = 181 bits (200), Expect = 1e-41 Identities = 156/192 (81%), Gaps = 12/192 (6%) Strand=Plus/Minus Query 5058 ATCGCTAGATTTTTGAGTTTTAAGCAGCATAACTGTTCCCAATGTACCCATAGAAGGTAA 5117 || ||||||||||||||||| ||||||||||||| |||||||| |||| |||||| ||| Sbjct 31341 ATTGCTAGATTTTTGAGTTTCAAGCAGCATAACTATTCCCAATATACCAGTAGAAGATAA 31282 Query 5118 GTTTCATAAAAATTAAAGTTCAGAGTTGATGTTGAGTTAAAATTCCAAGGTCAAGTCAGC 5177 ||||||||||||||||| || | ||||| ||| ||||| | | |||| |||| Sbjct 31281 GTTTCATAAAAATTAAATTTTTGGGTTGA---TGACGTAAAAATTTATGGTC----CAGC 31229 Query 5178 AAGACTGTTTGCAACCTTAATA-----ATCTTAATAATTATTGGTATCGAGAATTGTTGA 5232 ||||| ||| || |||| |||| ||||||||||||||||||||||| ||||||| Sbjct 31228 AAGACCGTTAGCGACCTAAATAATCTTATCTTAATAATTATTGGTATCGAACATTGTTGT 31169 Query 5233 CGTATTTTATGA 5244 |||||||||||| Sbjct 31168 CGTATTTTATGA 31157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45592444693407