Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006645.1 Length=21388 Score E Sequences producing significant alignments: (Bits) Value seq5548 102 1e-17 seq534 82.4 1e-11 seq3967 80.6 4e-11 >seq5548 Length=19829 Score = 102 bits (112), Expect = 1e-17 Identities = 139/191 (73%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 2784 CTGCAGGACAAATATTTATAATTTTCC-CAGAGGGATGAAAATACGGTCAAAAACGGGTA 2842 ||| ||||| ||||||||||||||||| ||| || ||| |||||| | |||| || Sbjct 14612 CTGTAGGACCAATATTTATAATTTTCCTAAGATGGTTGACAATACGCCCGAAAATGG--- 14668 Query 2843 CTTTGACTTGTGTAAGCCACGCCTCCTTTGGACACTttattaatgaaaattatttaaaaa 2902 || | ||| || |||||||| | | |||| || | ||| || ||||||||| | Sbjct 14669 CTCCGGTTTGCACAAACCACGCCTACATCGGACCTTTAACGAATAAATATTATTTAAGCA 14728 Query 2903 tattacatataaaatttaagaaatgaaaaaaa-tCAGAGGCTTACTGGATAGATAAATGA 2961 ||||| |||| ||| ||| |||| ||||||| |||| | ||| ||||| | ||||| Sbjct 14729 TATTAAATATGAAAAATAAAAAATTAAAAAAATTCAGGCACCTACAGGATAATTCAATGA 14788 Query 2962 AAAATAATTCG 2972 | ||||| || Sbjct 14789 ACGATAATCCG 14799 >seq534 Length=127237 Score = 82.4 bits (90), Expect = 1e-11 Identities = 163/234 (70%), Gaps = 18/234 (8%) Strand=Plus/Plus Query 6149 AGGCCTTATTACCCTACCGTAGTAAAATAAGACCTATTCGTAAGGTTTTTGAAAAAATTT 6208 ||||||||||| ||||| | || |||||| |||| | |||||| |||| ||| Sbjct 75 AGGCCTTATTATACTACCATCGTTTAATAAGGCCTAAAGACAGTGTTTTTAAAAATGTTT 134 Query 6209 AATTTTGTGTTTGTTTATGGTGAAAATTACCATTACTCCATTATA--GTTTATGGCTAGT 6266 ||||| | | ||||||||| || || || || || ||||| ||||| || Sbjct 135 AATTTAGATTATGTTTATGGAAGAATTTGCCGTTTTTCGTTTATAATATTTAT---TA-- 189 Query 6267 GTATTGATATAAAAAT-TAATGATACATTTCAA-----TGATTGAATGTAATA-TTTTCG 6319 ||||||||||| | |||| |||||| || ||||| | |||| |||| | Sbjct 190 --ATTGATATAAATGTCTAAT-TTACATTAAAATTTGTTGATTATCTTAAATAGTTTTTG 246 Query 6320 ATTTTATTCAAAATCTCCCTTAGCTAGGCCTTATTACCCGCCAGTACCTTATAT 6373 | |||||| || || | ||||||||||||||||| |||| |||||||||| Sbjct 247 A-TTTATTTCAATTCCCGCTTAGCTAGGCCTTATTGGCCGCACTTACCTTATAT 299 >seq3967 Length=150315 Score = 80.6 bits (88), Expect = 4e-11 Identities = 97/125 (78%), Gaps = 9/125 (7%) Strand=Plus/Minus Query 2433 GCGTCACGTAGAAAGAGACAAACATATATATCTGTAGGATTGAA-CGTACAAAAGAATGA 2491 |||||||| | |||| ||| | || || | ||||||| | ||| ||| ||||||| Sbjct 132287 GCGTCACG-ATAAAGCAACATATGCTTAGATGTATAGGATTAAGTCGT-CAAGAGAATGA 132230 Query 2492 GATGGAATACATTACACAGCGTATATTA--TTCTCGGGGTCTCCTCTTTGTTCGATGCTT 2549 || |||||||||||||| ||| ||| ||||||| |||||||||||| |||||||| Sbjct 132229 AATAGAATACATTACACAT--TATTTTAAATTCTCGG--TCTCCTCTTTGTGCGATGCTT 132174 Query 2550 CGTAG 2554 ||||| Sbjct 132173 CGTAG 132169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 68316673917393