Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006647.1 Length=8785 Score E Sequences producing significant alignments: (Bits) Value seq2001 107 1e-19 seq72 98.7 6e-17 seq435 87.8 1e-13 seq2489 86.0 4e-13 seq832 78.8 5e-11 >seq2001 Length=88587 Score = 107 bits (118), Expect = 1e-19 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 289 TAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAATAGTATG 348 ||||| ||||||||| | | ||| ||||||||||||||||| | | ||| |||| Sbjct 41259 TAAATAAATTTTTGATGATTACAGAATGAATCTCTATTAAATTATTTGTATAATGATATG 41200 Query 349 CAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAAATG 408 |||| |||| || || || || ||| ||| || ||| | ||||||||| |||| Sbjct 41199 CAAACTATCCTGGTTCTGTAAATTAAAAAGCGTAAAATTAGAAAAATAGTTAAGGAAAAC 41140 Query 409 AGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCATGC 468 || | ||||| |||| ||| ||| ||||||||| ||| ||| ||| || |||| ||| Sbjct 41139 AG--GCAAAAATACTTTCAATCATAATGCACTCTCTAATGCTTCGCATTATAAGTCGTGC 41082 Query 469 AAT 471 ||| Sbjct 41081 AAT 41079 >seq72 Length=304791 Score = 98.7 bits (108), Expect = 6e-17 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 269 TTTTTTCGTTTCTAGTGCACTAAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAA 328 ||||| |||||||| || ||||| |||||| || | | |||| |||| ||||| Sbjct 124095 TTTTTACGTTTCTACCACAATAAATAAATTTTCGATGATTACAGAATTGATCTTCATTAA 124036 Query 329 ATTATCTTGACAATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATGA 388 ||||||| | ||| ||| |||| || || ||||| || | | ||| || ||| | Sbjct 124035 ATTATCTGTATAATGATATACAAACAGTCCTGGTTCCGTAAATTTAAAAGCTTAAAATTA 123976 Query 389 TGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATG 448 ||||| ||| | | ||| | |||||| ||||||| ||||||| |||||| ||| Sbjct 123975 CAAAAATGGTTAAGAAGAAGAG--GCAAAAAAACTTTCGATTGTAAAGCGCTCTCTAATG 123918 Query 449 TTTCTCATCATGAGTCATGCAAT 471 || ||| ||||||| |||||| Sbjct 123917 CTTTGCATTATGAGTCGTGCAAT 123895 >seq435 Length=104838 Score = 87.8 bits (96), Expect = 1e-13 Identities = 132/183 (72%), Gaps = 16/183 (9%) Strand=Plus/Plus Query 290 AAATCAATTTTTGAAAAGTGTCAAATTAATCTCTATTAAATTATCTTGACAATAGTATGC 349 |||| ||||||||| | | ||||| |||| |||||||||||| ||||| |||| Sbjct 65507 AAATTAATTTTTGATGACTACAGAATTATTCTCCATTAAATTATCTGCACAATGATATGA 65566 Query 350 AAAATATCTTGAATCCGTGAACTAACAAGACTATAATGATGAAAATAGTTGCCGAAATGA 409 ||| |||| || | | | || ||| ||| | | |||||| |||||| || || | Sbjct 65567 AAATTATCCTGTTTACAT-AAATAA-AAG-CGAAAATGATAAAAATATTT-----AAGG- 65617 Query 410 GGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGATGTTTCTCATCATGAGTCATGCA 469 |||||||||| |||||||||| ||||||| ||| ||| || ||||||| || | Sbjct 65618 ------AAAAATTTTT-GATCGTAAAGGACTCTCTAATGCTTCGGATTATGAGTCGTGTA 65670 Query 470 ATA 472 ||| Sbjct 65671 ATA 65673 >seq2489 Length=109228 Score = 86.0 bits (94), Expect = 4e-13 Identities = 98/132 (74%), Gaps = 5/132 (4%) Strand=Plus/Minus Query 313 AATTAATCTCTATTAAATTATCTTGACAATAGTATGCAAAATATCTTGAATCCGTGAACT 372 ||||| | | |||||||||| ||||| |||||||| ||| ||| ||||| || | Sbjct 15292 AATTATTTTTAATTAAATTATTGGCACAATTATATGCAAACTATTTTGGTTCCGTAAATT 15233 Query 373 AACAAGACTATAATGATGAAAATAGTTGCCGAAATGAGGTGaaaaaaaTTTTTCGATCGT 432 || ||| || ||||| |||||||||| || | ||| | |||||| |||||||| Sbjct 15232 AAAAAGCGTAAAATGACGAAAATAGTTAAAGAGAAGAGATAAAAAAA-----TCGATCGT 15178 Query 433 AAAGCACTCTCT 444 |||||||| ||| Sbjct 15177 AAAGCACTGTCT 15166 >seq832 Length=456244 Score = 78.8 bits (86), Expect = 5e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 269 TTTTTTCGTTTCTAGTGCACTAAATCAATTTTTGAAAAGTGTCA-AATTAATCTCTATTA 327 ||||| |||||||| | ||||| | ||||||| | | ||| ||||| | || |||| Sbjct 80101 TTTTTACGTTTCTACCATAATAAATAATTTTTTGATGATT-TCAGAATTATTGTCCATTA 80159 Query 328 AATTATCTTGACAATAGTATGCAAAATATCTTGAATCCGTGAACTAACAAGACTATAATG 387 |||||| | |||||| |||||||| |||| || | || || || ||| || |||| Sbjct 80160 AATTATTTACACAATAATATGCAAACTATCCTGGTTTCGA-AATAAAAAAGCGTAAAATG 80218 Query 388 ATGAAAATAGT-TGCCGAAATGAGGTGaaaaaaaTTTTTCGATCGTAAAGCACTCTCTGA 446 | |||| | | || | |||| || |||| || ||||||||||||| || | Sbjct 80219 AAAAAAAAAAAATAAAGAGAAGAGGCAAAGAAAAAAAATCTATCGTAAAGCACTTGCTAA 80278 Query 447 TGTTTCTCATCATGAGTCATGCAATA 472 || ||| ||| || | | ||||||| Sbjct 80279 TGCTTCGCATTATAATTGGTGCAATA 80304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27994198082396