Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006649.1 Length=32108 Score E Sequences producing significant alignments: (Bits) Value seq2249 201 2e-47 seq6253 138 2e-28 >seq2249 Length=23881 Score = 201 bits (222), Expect = 2e-47 Identities = 285/395 (72%), Gaps = 28/395 (7%) Strand=Plus/Plus Query 29771 TAATTAGCCGCAAAAATGGGTAAGTACT-ATTTTTAATTACCGATACTTTTATTGCTTCT 29829 |||| ||||| |||| |||||||||| |||||| || ||||||| ||||||||| Sbjct 12936 TAATAAGCCGTGCAAATTGGTAAGTACTTATTTTTC--TA---ATACTTTGATTGCTTCT 12990 Query 29830 GGTTAAGGATTTTTCTTCGG-CATTGACATCCCGGAATTATAGAGCAATTAAAGTAAATA 29888 | || || || | |||||| ||||||| |||| ||| ||||||||| |||| Sbjct 12991 GTTTTCGGGTTATCCTTCGGGCATTGACGTCCCTGAAGTATAGAGCAGATAAA------- 13043 Query 29889 GATGCACTGATTGACAATC-----AATTGATATAGTGCTATAA-AATCCCGCGATGCAGC 29942 ||| |||||||| |||| ||| | ||||||| ||||| || ||||| |||| || Sbjct 13044 --TGCTCTGATTGATAATCTCTCTAATAGTTATAGTGTTATAATAACCCCGCAATGCGGC 13101 Query 29943 TTGTAATTAAATCACATCCTACTGTCTTACCAGTGATAGC--ATATTGCAATAGAATTAA 30000 || || || ||||||| | || ||| | |||| ||||| |||||| |||| | ||| Sbjct 13102 TTATAGTTGAATCACACCAGACGATCTAAGCAGTTATAGCTTATATTGTAATAAACATAA 13161 Query 30001 CTACAATGTTCATCGATGGAAAATATCACTACATCTGCGTCGCACCGAAAGAATGGAATA 30060 ||||||| ||| | | || ||| ||||||||||| ||| || || |||| || | Sbjct 13162 AGACAATGTCAATCAACTGCAAGTATTACTACATCTGCTTCGTCCCCAAGGAATTGACCA 13221 Query 30061 TATATAAAAGAAAGGACCTTGAAAAA----ATGATGCTCGACAGCTGCTTAGACCATCGA 30116 |||||| | | | |||||||| | || |||||||||||||| | | |||| Sbjct 13222 CGCATAAAACAGAAAAATTTGAAAAATAAAACGACAGTCGACAGCTGCTTATAACGTCGA 13281 Query 30117 AAAAAGACTACCTGCATCCACGGGGCCAACACCCA 30151 | | |||| | |||||||||||| ||| | ||||| Sbjct 13282 AGACAGACGATCTGCATCCACGGTGCCGAAACCCA 13316 >seq6253 Length=37147 Score = 138 bits (152), Expect = 2e-28 Identities = 163/224 (73%), Gaps = 25/224 (11%) Strand=Plus/Minus Query 711 ATAGTATATTACATACCTAGGCCAGTAAAATAATAAAAGTCTCAGAACACATGTAATTGT 770 |||||||||||||||| | ||||||| ||| ||| ||||||| |||||||| |||| Sbjct 36622 ATAGTATATTACATACATG---CAGTAAAGTAAAAAATCTCTCAGATCACATGTACTTGT 36566 Query 771 TGACCGAGGCGAAGCCAAGGTTGACAAACATGTGATCTGAGGCTTTACTTTTTACTGGCC 830 || ||||||||||||| ||||||||||| || ||||||| | Sbjct 36565 TGGCCGAGGCGAAGCCT------------------TCTGAGGCTTTCCTATTTACTGCCT 36524 Query 831 AAGGTGTGTATACTATTTTTCTGCTCGACGTAGCCGGAATGTGGCAACTTTGTTTAGCGC 890 | | |||||||||||||||||| ||||||| || ||||| | | ||||||||| | | Sbjct 36523 ATGATGTGTATACTATTTTTCTCCTCGACGGAGGCGGAAAGCGCCAACTTTGT----CAC 36468 Query 891 AGCGGCCAGAAAGTTGTCACTTTCCGGCCGGAGGGCAGAAAATG 934 || | |||||||| | |||||| |||||| ||||| || Sbjct 36467 AGTAGGACGAAAGTTGACGTTTTCCGCCCGGAGCTGAGAAACTG 36424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102613932649740