Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006650.1 Length=18768 Score E Sequences producing significant alignments: (Bits) Value seq22 95.1 1e-15 seq3129 93.3 5e-15 seq3421 89.7 6e-14 seq2398 87.8 2e-13 seq71 87.8 2e-13 seq3070 82.4 9e-12 seq1603 80.6 3e-11 seq493 80.6 3e-11 >seq22 Length=350358 Score = 95.1 bits (104), Expect = 1e-15 Identities = 92/116 (79%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 11422 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 11481 ||||||| || | ||||| | ||||| || ||||||||||||| ||| || |||||| | Sbjct 113869 CGCGGAGACCTATTTTCATCATTAAAATAAAATTATAAATAATAGAGATAGAACTCCAGA 113928 Query 11482 AATCGAGACTTAttttact-aaaattttctactcttttaggatcttttttcaaatt 11536 ||| ||| | ||||||| |||||||| |||||| || ||||||||| ||||| Sbjct 113929 AAT-TAGAACTTTTTTACTGAAAATTTTTACCTCTTTAAGTATCTTTTTTTAAATT 113983 Score = 89.7 bits (98), Expect = 6e-14 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 17950 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 18009 ||||||| || | ||||| | ||||| || ||||||||||||| ||| || |||||| | Sbjct 113869 CGCGGAGACCTATTTTCATCATTAAAATAAAATTATAAATAATAGAGATAGAACTCCAGA 113928 Query 18010 AATCGAGACTTattttact-aaaattttctacttttttaggatcttttttcaaatt 18064 ||| ||| | ||||||| |||||||| || ||| || ||||||||| ||||| Sbjct 113929 AAT-TAGAACTTTTTTACTGAAAATTTTTACCTCTTTAAGTATCTTTTTTTAAATT 113983 >seq3129 Length=29188 Score = 93.3 bits (102), Expect = 5e-15 Identities = 95/119 (80%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 17950 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 18009 ||||||| || | ||||| ||| |||||| ||||||||||||| ||| || ||||||||| Sbjct 4316 CGCGGAGACCTATTTTCAGCGTAAAATTAAAATTATAAATAATAGAGATAGAACTCCGGG 4257 Query 18010 AATCGAGACTTattttactaaaattttctacttttttaggat-cttt-tttcaaatttc 18066 | | |||||| ||||| || || || || || |||| ||| |||| ||| ||||||| Sbjct 4256 AGTAAAGACTT-TTTTATTAGAAATTCCT-TTTCTTTAAGATGCTTTGTTTAAAATTTC 4200 Score = 93.3 bits (102), Expect = 5e-15 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 11422 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 11481 ||||||| || | ||||| ||| |||||| ||||||||||||| ||| || ||||||||| Sbjct 4316 CGCGGAGACCTATTTTCAGCGTAAAATTAAAATTATAAATAATAGAGATAGAACTCCGGG 4257 Query 11482 AATCGAGACTTAttttactaaaattttctactcttttaggatcttt-tttcaaatttc 11538 | | |||||| ||||| || || || || ||||| || |||| ||| ||||||| Sbjct 4256 AGTAAAGACTT-TTTTATTAGAAATTCCTTTTCTTTAAGATGCTTTGTTTAAAATTTC 4200 >seq3421 Length=7916 Score = 89.7 bits (98), Expect = 6e-14 Identities = 128/175 (73%), Gaps = 9/175 (5%) Strand=Plus/Minus Query 11422 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 11481 ||||||| | | ||| | ||| |||||| ||||||||||||| ||| || ||| || | Sbjct 739 CGCGGAGACATATTTT-AGCGTCAAATTAAAATTATAAATAATTGAGATAGAACGCC-GA 682 Query 11482 AATCGAGACTTAttttacta----aaattttctactcttttaggatcttttttcaaattt 11537 || | ||| || ||||| || |||||| | |||||| |||||||||||| || | Sbjct 681 AAGCTAGAATT-TTTTATTATTGGAAATTTATTCCTCTTTAAGGATCTTTTTTTTAAATA 623 Query 11538 cagataacttcaatatttttGAAGTTATAACTACAAAACGAAGACTCTCTTTTTT 11592 | | || | |||| ||| | |||||| |||||||||| |||||||||| Sbjct 622 CCTAAAATGTTAATAGTTTCGGAGTTAT--TCACAAAACGAAATATCTCTTTTTT 570 Score = 86.0 bits (94), Expect = 8e-13 Identities = 127/175 (73%), Gaps = 9/175 (5%) Strand=Plus/Minus Query 17950 CGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGG 18009 ||||||| | | ||| | ||| |||||| ||||||||||||| ||| || ||| || | Sbjct 739 CGCGGAGACATATTTT-AGCGTCAAATTAAAATTATAAATAATTGAGATAGAACGCC-GA 682 Query 18010 AATCGAGACTTattttacta----aaattttctacttttttaggatcttttttcaaattt 18065 || | ||| || ||||| || |||||| | || ||| |||||||||||| || | Sbjct 681 AAGCTAGAATT-TTTTATTATTGGAAATTTATTCCTCTTTAAGGATCTTTTTTTTAAATA 623 Query 18066 cagataacttcaatatttttGAAGTTATAACTACAAAACGAAGACTCTCtttttt 18120 | | || | |||| ||| | |||||| |||||||||| |||||||||| Sbjct 622 CCTAAAATGTTAATAGTTTCGGAGTTAT--TCACAAAACGAAATATCTCTTTTTT 570 >seq2398 Length=99961 Score = 87.8 bits (96), Expect = 2e-13 Identities = 173/250 (69%), Gaps = 16/250 (6%) Strand=Plus/Plus Query 11272 TAAAtttttttttG--CGGGGCTATATTCCTTTAAGTGTCTAGA----TAACACTATAAT 11325 |||| |||||||| |||| | ||||| || || ||| |||| | |||| ||| | Sbjct 5242 TAAACTTTTTTTTCAACGGGAATTTATTCATTCAAATGTTTAGAATACTTACACCATACT 5301 Query 11326 TTATTTAGATATTTA-AATTAAT-----ATTGAATGTTATCAAAATATTATTTTGTGTTG 11379 || || | || ||| ||||||| ||| ||||| |||| | ||||| || Sbjct 5302 TTTTTCATATTTTTTCAATTAATGCATAATT--ATGTTCAAAAAAAAATATTTGTTGGGA 5359 Query 11380 CATACTTTACTTGGCGGCGAC-GCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTC 11438 | |||| ||||||| | | | | | |||| | | |||| ||||||| | | |||| Sbjct 5360 CGTACTCGCTTTGGCGGTGGCAGGCGAATCCCCTAGA-GGCCGCGCGGAGACTTATTTTC 5418 Query 11439 AACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTAtttta 11498 | |||||||||| ||||||||||||| ||| | |||||||||| | ||||| || | Sbjct 5419 AGCGTTAAATTAAAATTATAAATAATAGAGTCAGAACTCCGGGAGTTAGGACTTTTTAAA 5478 Query 11499 ctaaaatttt 11508 | |||| || Sbjct 5479 ATTAAATGTT 5488 Score = 87.8 bits (96), Expect = 2e-13 Identities = 173/250 (69%), Gaps = 16/250 (6%) Strand=Plus/Plus Query 17800 TAAAtttttttttG--CGGGGCTATATTCCTTTAAGTGTCTAGA----TAACACTATAAT 17853 |||| |||||||| |||| | ||||| || || ||| |||| | |||| ||| | Sbjct 5242 TAAACTTTTTTTTCAACGGGAATTTATTCATTCAAATGTTTAGAATACTTACACCATACT 5301 Query 17854 TTATTTAGATATTTA-AATTAAT-----ATTGAATGTTATCAAAATATTATTTTGTGTTG 17907 || || | || ||| ||||||| ||| ||||| |||| | ||||| || Sbjct 5302 TTTTTCATATTTTTTCAATTAATGCATAATT--ATGTTCAAAAAAAAATATTTGTTGGGA 5359 Query 17908 CATACTTTACTTGGCGGCGAC-GCCTAGGCCCCGAAACGGCCACGCGGAGCCCAAGTTTC 17966 | |||| ||||||| | | | | | |||| | | |||| ||||||| | | |||| Sbjct 5360 CGTACTCGCTTTGGCGGTGGCAGGCGAATCCCCTAGA-GGCCGCGCGGAGACTTATTTTC 5418 Query 17967 AACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTatttta 18026 | |||||||||| ||||||||||||| ||| | |||||||||| | ||||| || | Sbjct 5419 AGCGTTAAATTAAAATTATAAATAATAGAGTCAGAACTCCGGGAGTTAGGACTTTTTAAA 5478 Query 18027 ctaaaatttt 18036 | |||| || Sbjct 5479 ATTAAATGTT 5488 >seq71 Length=166687 Score = 87.8 bits (96), Expect = 2e-13 Identities = 132/178 (74%), Gaps = 11/178 (6%) Strand=Plus/Plus Query 11361 AAAATATTATTTTGTGTTGCATACTTTACTTGGCGGCGACGCCTAGGCCC--CGAAACGG 11418 ||||||| |||||||| |||||| ||| ||||| ||| ||| | | ||| Sbjct 151039 AAAATAT-ATTTTGTGGGACATACTCGTTTTGTCGGCGGCGCGC-GGCATGTCTTAGCGG 151096 Query 11419 CCACGCGGAGCCCAAGTTTCAACGTTAAAT-TACAATTATAAATAATGGAGCTACAACTC 11477 || |||||||||| | ||||| || |||| || ||||||||||||| ||| | ||||| Sbjct 151097 CCGCGCGGAGCCCTATTTTCAGCGATAAAACTAAAATTATAAATAATAGAGACAGAACTC 151156 Query 11478 CGGGAATCGAGACTTAttttacta-aaattttctactcttttaggatcttttttcaaa 11534 | ||| || ||||| ||||| || ||| || |||||||||||| | ||||| ||| Sbjct 151157 C-GGAGTCCGGACTT-TTTTATTAGAAACTTCCTACTCTTTTAG---CCTTTTTAAAA 151209 Score = 84.2 bits (92), Expect = 3e-12 Identities = 131/178 (74%), Gaps = 11/178 (6%) Strand=Plus/Plus Query 17889 AAAATATTATTTTGTGTTGCATACTTTACTTGGCGGCGACGCCTAGGCCC--CGAAACGG 17946 ||||||| |||||||| |||||| ||| ||||| ||| ||| | | ||| Sbjct 151039 AAAATAT-ATTTTGTGGGACATACTCGTTTTGTCGGCGGCGCGC-GGCATGTCTTAGCGG 151096 Query 17947 CCACGCGGAGCCCAAGTTTCAACGTTAAAT-TACAATTATAAATAATGGAGCTACAACTC 18005 || |||||||||| | ||||| || |||| || ||||||||||||| ||| | ||||| Sbjct 151097 CCGCGCGGAGCCCTATTTTCAGCGATAAAACTAAAATTATAAATAATAGAGACAGAACTC 151156 Query 18006 CGGGAATCGAGACTTattttacta-aaattttctacttttttaggatcttttttcaaa 18062 | ||| || ||||| ||||| || ||| || ||||| |||||| | ||||| ||| Sbjct 151157 C-GGAGTCCGGACTT-TTTTATTAGAAACTTCCTACTCTTTTAG---CCTTTTTAAAA 151209 >seq3070 Length=172320 Score = 82.4 bits (90), Expect = 9e-12 Identities = 141/197 (72%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 17963 TTTCAACGTTAAATTACAATTATAAATAATGGAGCTACAACTCCGGGAATCGAGACTTat 18022 ||||| | |||||||| ||||||||||||| |||||| | ||||||| | | | | Sbjct 65196 TTTCAGCATTAAATTAAAATTATAAATAATAGAGCTAGAGTTCCGGGAGCTGGAAGT--T 65139 Query 18023 tttact-aaaattttctacttttttaggatc-ttttttcaaatttcagataacttcaata 18080 |||| | |||||| | ||||| || ||| |||||| ||||||| | | || |||| Sbjct 65138 TTTATTGGAAATTTCATTTTTTTTCAGAATCTTTTTTTGAAATTTCTTAAATATTTAATA 65079 Query 18081 -tttttGAAGTTATAACTACAAAACGAAGACTCTCtttttttCTCTTCGTTTTTTGTTTA 18139 ||| |||| ||| | |||||||| || |||||| || || || ||||||| Sbjct 65078 GTTTATGAA-ATATTGGCAAAAAACGAAATGTC-ATTTTTTGTTCATCTTTAATTGTTTA 65021 Query 18140 TAACAAATAAAATTTTT 18156 |||| | ||| ||||| Sbjct 65020 TAACTTACAAACTTTTT 65004 >seq1603 Length=389245 Score = 80.6 bits (88), Expect = 3e-11 Identities = 112/155 (72%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 11411 CGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGCT 11470 || |||| || |||||||| | | ||||| |||||| | | ||||||||||| || | Sbjct 59568 CGTAACGACCTCGCGGAGCACTATTTTCAGAGTTAAAGAATA-TTATAAATAATAAAGAT 59626 Query 11471 ACAACTCCGGGAATCGAGACTTAttttactaaaattttctactcttttaggatctttttt 11530 | || |||||| | || | |||| | || |||| |||||| ||||||||| || Sbjct 59627 AGAATTCCGGGGGCC--AACATTTTTTGTTGGAAATTTCCTCTCTTTCAGGATCTTTATT 59684 Query 11531 caaatttcagataacttcaatatttttGAAGTTAT 11565 |||| ||| | || ||| |||||| ||| |||| Sbjct 59685 CAAAATTCCTAGAATATCATTATTTTAGAAATTAT 59719 >seq493 Length=480697 Score = 80.6 bits (88), Expect = 3e-11 Identities = 135/189 (71%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 17938 CCGAAACGGCCACGCGGAGCCCAAGTTTCAACGTTAAATTACAATTATAAATAATGGAGC 17997 || || || || | ||||| || | ||||| |||||||||| |||||||||||| || | Sbjct 327591 CCTAAGCGACCGCACGGAGACCTATTTTCAGCGTTAAATTAAAATTATAAATAACAGACC 327650 Query 17998 TACAACTCCGGGAATCGAGACTTattttact-aaaattttctactttttt----aggatc 18052 | ||| ||||| || || || | || | || ||||||| |||||| || | Sbjct 327651 TGGGACTACGGGAGTCTGGA-TTTTCGTATTGAACATTTTCTTTTTTTTTAACAAGTTTT 327709 Query 18053 ttttttcaaatttcagataacttcaatatttttGAAGTTATAACTACAAAACGAAGACTC 18112 | |||| ||||||| | || | |||| ||||| |||||| | | ||||||||| | Sbjct 327710 TGTTTTTAAATTTCTTA-AATGTTAATAGTTTTGGAGTTATGAACA-AAAACGAAG--TT 327765 Query 18113 TCttttttt 18121 |||||||| Sbjct 327766 CCTTTTTTT 327774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59933474738733