Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006651.1 Length=19161 Score E Sequences producing significant alignments: (Bits) Value seq1125 342 6e-90 seq93 132 6e-27 seq4642 91.5 2e-14 seq3671 84.2 3e-12 seq1548 84.2 3e-12 seq207 80.6 3e-11 >seq1125 Length=62062 Score = 342 bits (378), Expect = 6e-90 Identities = 258/304 (85%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 11198 TACCGGTTCGTTCTACCACCGGAATATGATGCTTATGATACAAGATGGACATTAAAGTAT 11257 ||||| || |||||||| ||||| |||||||| ||||||||||| |||||||| ||||| Sbjct 59616 TACCGATTTGTTCTACCGCCGGAGTATGATGCGTATGATACAAGGTGGACATTGAAGTAC 59675 Query 11258 CGATCAAATCTGCCGGGACTCGTAGAACTTATGCCCCAAAGTGGTGTTTACGTCAGCTAC 11317 || ||||||||| ||||||||||||||||| || || ||||||||||| |||||| | Sbjct 59676 CGCAAAAATCTGCCAGGACTCGTAGAACTTATACCTCATAGTGGTGTTTATGTCAGCCAA 59735 Query 11318 GGAGACCTCAAATACTGTCAGCAAGTATCGAAAGATTGCAAATCATTAGCTCGACGATTA 11377 ||||| ||| |||| ||| |||| |||| |||||||||||||||||||||||||| || Sbjct 59736 GGAGAACTCGCATACCGTCTGCAAATATCAGAAGATTGCAAATCATTAGCTCGACGACTA 59795 Query 11378 TTACCACAAGTCTTTAACAGAAATGCACTGAGTGTTTGTTCATCAATGAGTGAGAAAGCG 11437 ||| || |||| || |||||||||||||||||||||||||||||||| |||||||| | | Sbjct 59796 TTAACAGAAGTATTCAACAGAAATGCACTGAGTGTTTGTTCATCAATAAGTGAGAAGGAG 59855 Query 11438 CAGGCTTCTAATAATGTTGGCTCTACTATAAGGCCAGATTTAGATGATCATGCTTGTTCG 11497 |||||||| | || ||||||||||| | | |||||||| |||||||| | ||| ||| || Sbjct 59856 CAGGCTTCAAGTACTGTTGGCTCTAATGTGAGGCCAGAGTTAGATGACCGTGCGTGTGCG 59915 Query 11498 GTGC 11501 | || Sbjct 59916 GCGC 59919 Score = 324 bits (358), Expect = 2e-84 Identities = 354/464 (76%), Gaps = 21/464 (5%) Strand=Plus/Plus Query 8088 ATGTTTACGG-AAGTGTTTTTTATTGTTTCAGATGACACGTAAAAATGATAATAAGCGAG 8146 || ||||||| |||||||||| |||||||||||||||| || ||||||| || |||||| Sbjct 59149 ATATTTACGGTAAGTGTTTTTGATTGTTTCAGATGACAAATATAAATGATGATGAGCGAG 59208 Query 8147 CATTCTATGTTGTTCAATTCATAGAATTGCCTTTTGAAAGTATTGACGATTACGTATGCG 8206 ||||||||||| ||||||||| | ||||||||||| ||||||| || |||| | Sbjct 59209 CATTCTATGTTCTTCAATTCAAATGCTTGCCTTTTGATTGTATTGATAATGACGTGGTTG 59268 Query 8207 TGCCGAACACGTGGCTGATAGTACGTAAAGCGACGGATGA--------------CAAGGT 8252 |||||||||| ||||||||| || |||| || | ||||| ||| | Sbjct 59269 TGCCGAACACCTGGCTGATACTATCTAAACCGGCAGATGAGTCAATGATGGGCCCAATGG 59328 Query 8253 C-GTTGTTGCGTACCCTAAAGACGAAGATCCTTTTGATACAAGAGATCGTGTGAAGAGGA 8311 | | ||| | |||| | | | |||||| | | | ||||| ||| | |||||||||| Sbjct 59329 CAGCCGTTACATACCTAATACA-GAAGATGCATCTATTACAAAAGAAAGCGTGAAGAGGA 59387 Query 8312 AAGAGAGATACAATGATGAGTGGAGATTT-TATCTGGCCTCTATCAAATATGAATCAAGT 8370 |||| | ||||||| | ||||| |||| ||| ||||| | |||||||| ||||| || Sbjct 59388 AAGACAAATACAATAAAGAGTGC-GATTGGTATGTGGCCATTGTCAAATATAAATCAGGT 59446 Query 8371 GAGTTTTAGTAAATGTATTAGTTAATAGATTGTGCGTTA-TATCATTGAAGTATATTCAG 8429 ||||| | | ||||| ||||||| ||||| ||||| |||| | ||||||| ||||| Sbjct 59447 GAGTTAGAATGAATGTGTTAGTTATTAGATCAGGCGTTGGTATCGTAGAAGTATTTTCAG 59506 Query 8430 ATTCTGAACATCTCATAAATTAAAAGATAATAATGTTGATATAtttttttCAGATTCTTA 8489 ||| |||| || | | |||||| || |||||| ||||||| ||| ||||||||||||| Sbjct 59507 ATTTAGAACGTCCCTTGAATTAAT-GAAAATAATATTGATATGTTTGTTTCAGATTCTTA 59565 Query 8490 CAGTGATGCAGAATTTTGGATCGCTACGAGAAATGATTACGGAC 8533 |||||||||||||| ||||||| |||| ||||| |||| |||| Sbjct 59566 CAGTGATGCAGAATCTTGGATCACTACAAGAAAAGATTGTGGAC 59609 Score = 147 bits (162), Expect = 3e-31 Identities = 243/342 (71%), Gaps = 34/342 (10%) Strand=Plus/Plus Query 14583 AAGTTAatttattttgttgtgtgatttatttttattattttt---gtcactgacagtttt 14639 || |||||||| ||||| | ||||||||||||||| || || ||||||||| | ||| Sbjct 60820 AACTTAATTTACTTTGTCATATGATTTATTTTTATTGTTATTCCTGTCACTGACTGGTTT 60879 Query 14640 taaaatatatttttttCCGAGCCAAAAACTGTCAAACAAGAAAATATTAAATAAGTTCTA 14699 | |||| ||||||| || | |||| |||||||| || |||| ||| | |||||||| || Sbjct 60880 TCAAATTTATTTTTGTCAGCGCCACAAACTGTCCAATAAGATTATAGTCAATAAGTTGTA 60939 Query 14700 AGCT----TG-----GAGACAAGCGA--AATATTAT--TTATTCCTGTTAAAAAGCCTTC 14746 |||| || | | ||| | |||| || || |||| || ||| ||| | Sbjct 60940 AGCTCTTCTGCGCGTGTCTCCAGCAAGCAATAAAATCATTGTTCCCGT-AAATAGCGTGA 60998 Query 14747 AGTAATTAATTGGTTTATACAATAATTTATCTCAAACAGAGTGATAA-TTATAAAATTTT 14805 | || || |||| ||| | | || | | | | | || ||| ||| |||| Sbjct 60999 ACTAGTT---TGGT----ACATTGGT--ATGGCGACGATAATTTCAAGTTACAAAGTTTT 61049 Query 14806 TGAGTAAATTATTTATAAACCATAAATACGTTTAATTTTAGTTTTTGACTGGCTTATAAG 14865 | ||||||| |||||||| || ||| || |||| |||||||| | |||| |||| Sbjct 61050 T-AGTAAATGATTTATAAGCCGTAAGTAAGTTTCATTTTAGTCTCTGACG------TAAG 61102 Query 14866 ACTTACAACGGAGACTGCCGAGTATCTATAACATGTATTTTA 14907 ||| ||||||||||||||| ||| ||| |||||||||||||| Sbjct 61103 ACTCACAACGGAGACTGCCCAGTGTCTGTAACATGTATTTTA 61144 Score = 143 bits (158), Expect = 3e-30 Identities = 172/230 (75%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 7188 GACGCAATATGAAACGTTT-TCCCCCTCCACTGGACCGATCGGTACATCCAGTGGTATAA 7246 |||||||| || ||||||| || ||||| ||| || || || | || |||||| Sbjct 57917 GACGCAATGTGTAACGTTTATCTCCCTCGACTCGA-------GTTCAACTAGCTGTATAA 57969 Query 7247 ATTGAGTTCAATGACGGCGGGGAATTACAGTTGACGAATCGCTTCCCTTTCTCTACAACG 7306 || ||| | ||| | ||||||| | | |||| | |||||| || || | |||| | Sbjct 57970 ATAGAGGTTAAT-ATGGCGGGGCAGTGCAGTATAAAAATCGCCTCGCTAT----ACAATG 58024 Query 7307 TGGACAGTTGTGATGAGAAAATTTTGCTGTTACAAGAAATACATAGCTGAAATAAAAGGT 7366 ||||||||||||| | ||| | | | |||||||||| | | ||| |||||||||||| Sbjct 58025 CGGACAGTTGTGATAATAAATTGTCGTTGTTACAAGATAAAAGTAGTAGAAATAAAAGGT 58084 Query 7367 AAAGATCAATTTGATTATCACCTAATTTAGATTGCATTTCAA-GGCCAAT 7415 || ||| |||||||| ||||||||||||||| |||||| || ||||||| Sbjct 58085 AAGGATATATTTGATTTTCACCTAATTTAGATGGCATTTTAACGGCCAAT 58134 Score = 141 bits (156), Expect = 1e-29 Identities = 222/304 (73%), Gaps = 34/304 (11%) Strand=Plus/Plus Query 14196 TATTGCTATGTAAGTAAAG-CCATTCAATAATTCCAAATTATTGAGGCTTAGAAT---TT 14251 |||| |||| || |||| ||||||||| |||||||| |||||||||||||||| || Sbjct 60499 TATTATTATGGAA--AAAGACCATTCAATGATTCCAAAGTATTGAGGCTTAGAATAATTT 60556 Query 14252 GAAAATGATTGTAATTAGAGTAATGATTAGTATTCTTATATTATTTCGGAATTACGGGTT 14311 ||||| || |||| | || ||| | | || | |||||| ||||||||||||| || Sbjct 60557 AAAAATTAT-GTAACT-GA-TAAC----ATTCTTATAATATTAATTCGGAATTACGGATT 60609 Query 14312 AGACTTATTAGAGAAAATAATAATAGTGCAA----TATGTAGCTTACTAACGCATCATCA 14367 | | |||||||||||||| || |||||| || ||||||| ||| |||||| Sbjct 60610 AAATTTATTAGAGAAAATCATGATAGTGTAATAATTATGTAGGTTATTAACGC------- 60662 Query 14368 TTAATAGTTGTAATTTTAATTTATGTTCCTAATCTT-GCTGTGAGAATTATACCTTTAGA 14426 |||| || | ||| | | | || | || || | | | | |||| |||||| Sbjct 60663 --AATACCTG-ACGTTTCAGTGA-GT--ATTATATTAGATATATTA--TATATATTTAGA 60714 Query 14427 TGTTGTGAACAATCAAGTAGATTAATAGTAGTTTGGTTAAGATTAGAAGTAGCCTCTGCC 14486 ||||| |||||| ||||||||||||||||||| ||| ||| |||||| |||| ||||| Sbjct 60715 TGTTGAAGACAATCGAGTAGATTAATAGTAGTTT-GTTGAGACTAGAAGCAGCCGCTGCC 60773 Query 14487 ACGC 14490 | || Sbjct 60774 AAGC 60777 >seq93 Length=52126 Score = 132 bits (146), Expect = 6e-27 Identities = 128/160 (80%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 14982 ATCTTTTTTATTCATTTATAAAATGAGCATAAACAGCGTGCAAATGTAACGCGCGCTTAA 15041 |||||||||||| | | ||||||||||| ||| |||||||| | |||| ||| | || Sbjct 48645 ATCTTTTTTATTTAATCATAAAATGAGCTTAATG-GCGTGCAAGTTTAACACGCCC--AA 48701 Query 15042 CTAATCAGCGAACAAACACAGTTCTATTGATAGCAGCAGCATGTACCTGAACAAAAATTA 15101 | ||||||||||||| || || || | ||| || |||||||| | ||| |||||||| Sbjct 48702 C-AATCAGCGAACAAGAAC--TTGTAGTAATAACAACAGCATGTGCTTGAGCAAAAATTT 48758 Query 15102 TGAGGGGCCTCTGATAAACACGAAACTCGCATAAATAACT 15141 | ||||||| |||||||| |||||||| ||||||||||| Sbjct 48759 TTAGGGGCCCTTGATAAACGCGAAACTCTCATAAATAACT 48798 >seq4642 Length=20999 Score = 91.5 bits (100), Expect = 2e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 3346 AGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAATGGT 3405 |||||||||||| |||| ||||||| |||| ||| |||||||| || |||||| |||| Sbjct 12263 AGGGTAGAAAAGAATGGAAAACTTTTGGCCAGATCGAAAGGGGTTGGGTTCAAAATTGGT 12322 Query 3406 TGATTTGGCGTGGAATGCCCCATAG 3430 |||||||| |||||| ||||||| Sbjct 12323 CGATTTGGCTTGGAATATCCCATAG 12347 >seq3671 Length=43759 Score = 84.2 bits (92), Expect = 3e-12 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 3337 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 3396 |||||| | ||||||||||| |||| ||| ||| |||| ||| |||||| | || || Sbjct 28312 GTTTTTCAAAGGGTAGAAAAAAATGGAAAATTTTTGGCCAGATCGGAAGGGGACGGGTTC 28253 Query 3397 AAAAATGGTTGATTTGGCGTGGAATGCCCCATAGAT 3432 |||| |||| | |||||| |||||| ||||||| || Sbjct 28252 AAAAGTGGTCGGTTTGGCATGGAATACCCCATATAT 28217 >seq1548 Length=485651 Score = 84.2 bits (92), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 3338 TTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCA 3397 ||||| | |||||||| ||| ||| ||||||| || | ||| |||||||||||| || Sbjct 301614 TTTTTCAAAGGGTAGACAAGAATGAGAAACTTTTGGCTAGATCGAAAGGGGTCAGGTTC- 301672 Query 3398 AAAATGGTTGATTTGGCGTGGAATGCCCCAT 3428 ||| |||| |||||||| |||||| |||||| Sbjct 301673 AAAGTGGTCGATTTGGCATGGAATACCCCAT 301703 >seq207 Length=109948 Score = 80.6 bits (88), Expect = 3e-11 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 3337 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 3396 |||||| | |||||||||||| | ||||||| |||| ||| ||| | ||| || | Sbjct 71333 GTTTTTCAAAGGGTAGAAAAGAAAATAAAACTTTTGGCCAGATCGAAAAGCGTCGGGTCC 71274 Query 3397 AAAAATGGTTGATTTGGCGTGGAATGCCCCATAGATAGT 3435 |||| |||| |||||| | |||||| ||||||| ||||| Sbjct 71273 AAAAGTGGTCGATTTGACATGGAATACCCCATATATAGT 71235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61190954615532