Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq1105 95.1 2e-15 seq3046 87.8 3e-13 seq2024 84.2 4e-12 >seq1105 Length=309954 Score = 95.1 bits (104), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 25176 AACCTTTTAAAATTGGAATTTTGAGTTCTGCTTTTAACAGGAGC--TGTTTGGGCATTTT 25233 ||||| ||| ||||||||||||||||||| |||||||||||||| |||| || |||||| Sbjct 272961 AACCTCTTAGAATTGGAATTTTGAGTTCTACTTTTAACAGGAGCTTTGTTGGGACATTTT 273020 Query 25234 CTGAGATATTTTGG 25247 ||||||||||| || Sbjct 273021 CTGAGATATTTCGG 273034 >seq3046 Length=83782 Score = 87.8 bits (96), Expect = 3e-13 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 25156 AAAATTCAATTTCCGTGAGGAACCTTTTAAAATTGGAATTTTGAGTTCTGCTTTTAACAG 25215 ||| || || ||| ||| ||| || ||| |||| |||||||||| || ||||||||| | Sbjct 63953 AAATTTAAAATTCAATGAAGAATCTCTTAGAATTAGAATTTTGAGCTCCGCTTTTAACGG 63894 Query 25216 GAGCT--GTTTGGGCATTTTCTGAGATATTTT 25245 | ||| |||||| |||||||||||||||||| Sbjct 63893 GGGCTTTGTTTGGACATTTTCTGAGATATTTT 63862 Score = 86.0 bits (94), Expect = 1e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 25324 AAAATATCTCAAGAAATGCCCAAACACAGCTCCTGTTAAAAGCGAAACTCAAAATTCCAA 25383 ||||||||||| ||||| ||||||| ||| || |||||||||| | |||||||||| || Sbjct 63862 AAAATATCTCAGAAAATGTCCAAACAAAGCCCCCGTTAAAAGCGGAGCTCAAAATTCTAA 63921 Query 25384 TTTTTAAAGGTTCCTCATGGAAATTGAATTTT 25415 || | | || ||| |||| ||| || || ||| Sbjct 63922 TTCTAAGAGATTCTTCATTGAATTTTAAATTT 63953 >seq2024 Length=174046 Score = 84.2 bits (92), Expect = 4e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 25323 CAAAATATCTCAAGAAATGCCCAAACACAGCTCCTGTTAAAAGCGAAACTCAAAATTCCA 25382 |||||||||||| |||||| || |||| || || ||||||||||| | |||||||||||| Sbjct 155883 CAAAATATCTCAGGAAATGTCCCAACAAAGGTCATGTTAAAAGCGGAGCTCAAAATTCCA 155942 Query 25383 ATTTTTAAAGGTTCCTCATGGAAATT 25408 | | | | |||||| ||| ||| || Sbjct 155943 AATCTAAGAGGTTCTCCATCGAATTT 155968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83272045276575