Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006654.1 Length=13597 Score E Sequences producing significant alignments: (Bits) Value seq1125 288 9e-74 >seq1125 Length=62062 Score = 288 bits (318), Expect = 9e-74 Identities = 243/299 (81%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 4107 CGTTTTGTTCTACCATCGGAATATGATCCTCGTGATACCAGATGGACATTGAAGTATCGA 4166 || ||||||||||| |||| |||||| | |||||| || |||||||||||||| || Sbjct 59619 CGATTTGTTCTACCGCCGGAGTATGATGCGTATGATACAAGGTGGACATTGAAGTACCGC 59678 Query 4167 ACCAATCTGCCGGGACTTGTAGAACTTATGCCTCAAAGTGATGTTTACGTCAGCTACGGA 4226 | |||||||| ||||| ||||||||||| ||||| |||| |||||| |||||| | ||| Sbjct 59679 AAAAATCTGCCAGGACTCGTAGAACTTATACCTCATAGTGGTGTTTATGTCAGCCAAGGA 59738 Query 4227 GACCTCAAATACTGTCAGCAAGTATCAAAAGATTGCAAATCATTAGCACTACGATTATTA 4286 || ||| |||| ||| |||| ||||| ||||||||||||||||||| | |||| ||||| Sbjct 59739 GAACTCGCATACCGTCTGCAAATATCAGAAGATTGCAAATCATTAGCTCGACGACTATTA 59798 Query 4287 CCAGCAGTATTCAACAGCAAAGCATTGAGTGTTTGTTTATCAATTACTGAGAGAGCGCAG 4346 ||| |||||||||||| || ||| |||||||||||| |||||| | ||||| | |||| Sbjct 59799 ACAGAAGTATTCAACAGAAATGCACTGAGTGTTTGTTCATCAATAAGTGAGAAGGAGCAG 59858 Query 4347 GCTTCTGATAATGTTCGATCTAATGCAAGGCCAGAATTAGATGATCACGCGTGTTCGGC 4405 ||||| || |||| | ||||||| |||||||| |||||||| | |||||| |||| Sbjct 59859 GCTTCAAGTACTGTTGGCTCTAATGTGAGGCCAGAGTTAGATGACCGTGCGTGTGCGGC 59917 Score = 194 bits (214), Expect = 1e-45 Identities = 323/461 (70%), Gaps = 22/461 (5%) Strand=Plus/Plus Query 1623 ATTTACGA-AAGTATTTTTATTTGTTTCAGATGAAACGTCATAATAACTATAAGCGAGCG 1681 ||||||| |||| ||||| ||||||||||||| | | ||| | || ||||||| Sbjct 59151 ATTTACGGTAAGTGTTTTTGATTGTTTCAGATGACAAATATAAATGATGATGAGCGAGCA 59210 Query 1682 TTTTATGTCGTTCAATTTATAGAATTGCCTTTTGAAGGTATTGATGATTACGTATGCGTG 1741 || ||||| ||||||| | | ||||||||||| |||||||| || |||| ||| Sbjct 59211 TTCTATGTTCTTCAATTCAAATGCTTGCCTTTTGATTGTATTGATAATGACGTGGTTGTG 59270 Query 1742 CCGTACACTTGGCTGATAGTACGTAAAGCGACGGATCAG---------------AAGGCT 1786 ||| |||| ||||||||| || |||| || | ||| || | ||| Sbjct 59271 CCGAACACCTGGCTGATACTATCTAAACCGGCAGATGAGTCAATGATGGGCCCAATGGCA 59330 Query 1787 GTCGTTGCTTACCCTAAAGACGAAGATCCTTTCAACACCAGAGATCGCGTTAAAAGGAAA 1846 | |||| | |||| | | | |||||| | | | || | ||| |||| || |||||| Sbjct 59331 GCCGTTACATACCTAATACA-GAAGATGCATCTATTACAAAAGAAAGCGTGAAGAGGAAA 59389 Query 1847 GAAAGACACAATCACGAGTGGAGATTT-TATATGGCTATCGTTAAATATGAATCAGGTGA 1905 || | | ||||| | ||||| |||| ||| |||| || || |||||| |||||||||| Sbjct 59390 GACAAATACAATAAAGAGTGC-GATTGGTATGTGGCCATTGTCAAATATAAATCAGGTGA 59448 Query 1906 GTTTGAATCAATGTATTAGGTAATTCGATTGTGCG-TAGTATTGTCGCAGTATATTTGAA 1964 ||| |||| ||||| ||| || ||| ||| ||| | |||| || | ||||| || | Sbjct 59449 GTTAGAATGAATGTGTTA-GTTATTAGATCAGGCGTTGGTATCGTAGAAGTATTTTCAGA 59507 Query 1965 CCTAGATAGTCTCAGAAATTGAGAGAAAGTAATAttttttttattttttCAGATAGTTAC 2024 |||| ||| | |||| | |||| ||||||| | | || |||||||| |||| Sbjct 59508 TTTAGAACGTCCCTTGAATT-AATGAAAATAATATTGATATGTTTGTTTCAGATTCTTAC 59566 Query 2025 GGAGATGCAGAATATTGGATTGCGACAAGAAATGATTATGG 2065 | |||||||||| |||||| | |||||||| |||| ||| Sbjct 59567 AGTGATGCAGAATCTTGGATCACTACAAGAAAAGATTGTGG 59607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 43387855291080