Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006655.1 Length=15279 Score E Sequences producing significant alignments: (Bits) Value seq1125 279 5e-71 seq1458 156 4e-34 seq3358 136 4e-28 >seq1125 Length=62062 Score = 279 bits (308), Expect = 5e-71 Identities = 238/294 (81%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 4711 TTGTTCTACCACCGGAATATGATCCTCGTGATACCAGATGGACATTGAAGTATCGAACAA 4770 |||||||||| ||||| |||||| | |||||| || |||||||||||||| || | || Sbjct 59623 TTGTTCTACCGCCGGAGTATGATGCGTATGATACAAGGTGGACATTGAAGTACCGCAAAA 59682 Query 4771 ATCTGCCAGGACTCGTAGAACTTACGCCTCAAAGTGGTGTTTACGTCAGCTACGGAGACC 4830 |||||||||||||||||||||||| ||||| ||||||||||| |||||| | ||||| | Sbjct 59683 ATCTGCCAGGACTCGTAGAACTTATACCTCATAGTGGTGTTTATGTCAGCCAAGGAGAAC 59742 Query 4831 TCAAATACTGTCAGCAAGTATCAAAAGATTGCCAATCATTAGCGAAGCGATTATTATCAG 4890 || |||| ||| |||| ||||| |||||||| |||||||||| ||| ||||| ||| Sbjct 59743 TCGCATACCGTCTGCAAATATCAGAAGATTGCAAATCATTAGCTCGACGACTATTAACAG 59802 Query 4891 CAGTATTTAACAGAAAAGCACTAAGTGTTTGTTTCTCAATGACTGAGAAAGCGCAGGCAC 4950 |||||| |||||||| ||||| |||||||||| ||||| | |||||| | |||||| Sbjct 59803 AAGTATTCAACAGAAATGCACTGAGTGTTTGTTCATCAATAAGTGAGAAGGAGCAGGCTT 59862 Query 4951 CTGATAATGTTGTATCTAATATAAGGCCAGAATTAGATGATAATGCGTGTACGG 5004 | || ||||| |||||| | |||||||| |||||||| ||||||| ||| Sbjct 59863 CAAGTACTGTTGGCTCTAATGTGAGGCCAGAGTTAGATGACCGTGCGTGTGCGG 59916 Score = 174 bits (192), Expect = 2e-39 Identities = 323/466 (69%), Gaps = 24/466 (5%) Strand=Plus/Plus Query 698 TATTTAAGG-ACGGGTTTTTACGTGTTTCAGATGATTCGTAGAAGGGACAATAATAAGCG 756 |||||| || | | |||||| |||||||||||| || || || | || |||| Sbjct 59150 TATTTACGGTAAGTGTTTTTGATTGTTTCAGATGACAAATATAAATGA---TGATGAGCG 59206 Query 757 AGCATTCTATGTTGTTCAATTCCTAGAATTGCCTTTTGAAGGTATTGATGATTACGTATG 816 ||||||||||||| |||||||| | ||||||||||| |||||||| || |||| Sbjct 59207 AGCATTCTATGTTCTTCAATTCAAATGCTTGCCTTTTGATTGTATTGATAATGACGTGGT 59266 Query 817 CGTGCCGTACACTTGGCTGATAGTACGTAAAGCGACGGATCAG--AA------GTCTATT 868 |||||| |||| ||||||||| || |||| || | ||| || || | | | | Sbjct 59267 TGTGCCGAACACCTGGCTGATACTATCTAAACCGGCAGATGAGTCAATGATGGGCCCAAT 59326 Query 869 -------GTTGCGTACCCTAAAGGGGAAGATCCTTTTGTCACCAAAGATCGCGTCAAGAA 921 ||| | || ||||| |||||| | | | | || ||||| |||| |||| Sbjct 59327 GGCAGCCGTTACATA-CCTAATACAGAAGATGCATCTATTACAAAAGAAAGCGTGAAGAG 59385 Query 922 CAAGGAGAGATGCAATAACGAGTGGAGATT-TTTTATGGCTGCGATCAAATATGAAACAG 980 || || | || |||||| |||| | |||| | | |||| |||||||| || ||| Sbjct 59386 GAAAGACAAATACAATAAAGAGT-GCGATTGGTATGTGGCCATTGTCAAATATAAATCAG 59444 Query 981 GTGAGTTTGAATCAATGTATTAGTTAATCGGTTGTGCG-TAGTATTGTCGAAGTAAATTC 1039 ||||||| |||| ||||| ||||||| | | | ||| | |||| || |||||| ||| Sbjct 59445 GTGAGTTAGAATGAATGTGTTAGTTATTAGATCAGGCGTTGGTATCGTAGAAGTATTTTC 59504 Query 1040 GGATCTAGATCATCTCAGAAATTGAGAGAAAGTAATAtttttttATNNTTTTCAGATAGT 1099 ||| |||| | || | |||| | |||| ||||||| | | | |||||||| | Sbjct 59505 AGATTTAGAACGTCCCTTGAATT-AATGAAAATAATATTGATATGTTTGTTTCAGATTCT 59563 Query 1100 TACGGAGATGCAGAATATTGGATTGCGATGAGAAATGATAATGGAC 1145 ||| | |||||||||| |||||| | | ||||| ||| ||||| Sbjct 59564 TACAGTGATGCAGAATCTTGGATCACTACAAGAAAAGATTGTGGAC 59609 >seq1458 Length=170300 Score = 156 bits (172), Expect = 4e-34 Identities = 218/304 (72%), Gaps = 25/304 (8%) Strand=Plus/Minus Query 10165 TCATATCGGTTACCAGTCTGAACGGTGTTTGATCCATAAGAGATTGAACCTTTTATATTC 10224 ||||| ||||||||||| ||||| | || |||||| |||||| |||||| |||||||| Sbjct 126927 TCATACCGGTTACCAGTTTGAACAATATTCGATCCAAAAGAGAATGAACCACTTATATTC 126868 Query 10225 GTATTACGAAAATGATTACCTTTGGTGTTAGTGACTGATCCGTAGATTACTTG------A 10278 ||||| | ||| | | |||||| ||||||||| |||||| || | || ||| | Sbjct 126867 TTATTATTATAAT-AGTTCCTTTGCTGTTAGTGATTGATCCTTAAACTATTTGAGAAGTA 126809 Query 10279 GGTTTGCCTCCGTATTGTTGATTTGAATTTGAACCAGGTATGATATTGTGAACAAAATCC 10338 |||| | | ||||||||||||||||| ||||| | | |||| ||||| Sbjct 126808 GGTTATATTTTGGATTGTTGATTTGAATTT------GGTATAAAACGCTGAAACAAATCT 126755 Query 10339 ATGACCGTTCCCATACCATCGAGAATACTAGACATCCCAGCCATCTTCCTAGACTTTGCG 10398 | ||| | || || || |||| || ||||| || |||||||| |||| | ||| Sbjct 126754 A------TTCTC--ACAATTGAAGATACCAGTCATCCTAGGCATCTTCCCAGACCTCGCG 126703 Query 10399 TATGCAAGCCCTGTTGAACAACCGTTCGGAAACACTGTGAAAGAAAAGGTTGTATTAATA 10458 ||| ||| |||||||||| | ||||| |||| || || |||||||| ||| || | Sbjct 126702 GATGTCAGCTCTGTTGAACAGCTGTTCGAAAACGCT----AAAAAAAGGTTATATCAAAA 126647 Query 10459 ATCA 10462 |||| Sbjct 126646 ATCA 126643 >seq3358 Length=32732 Score = 136 bits (150), Expect = 4e-28 Identities = 137/175 (78%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 10289 CGTATTGTTGATTTGAATTTGAACCAGGTATGATATTGTGAACAAAATCCATGACCGTTC 10348 || ||| |||||||||||||| |||||| || | || ||||| ||||| || Sbjct 32082 CGGATTCTTGATTTGAATTTG------GTATGAAATGCTAAAACAAATCTCTGACCAGTC 32135 Query 10349 CCATACCATCGAGAATACTAGACATCCCAGCCATCTTCCTAGACTTTGCGTATGCAAGCC 10408 ||||||||| || |||| || |||| ||| |||||| | |||| ||||| |||||| Sbjct 32136 CCATACCATTGAAGATAC-AGTCATCTCAGACATCTTTCCAGACCTTGCGGGGGCAAGCT 32194 Query 10409 CTGTTGAACAACCGTTCGGAAACACTGTGAAAGAAAAGGTTGTAT--TAATAATC 10461 || |||||||||| |||||||||||||||||| |||||||| ||| |||||||| Sbjct 32195 CTATTGAACAACCATTCGGAAACACTGTGAAA-AAAAGGTTATATTATAATAATC 32248 Score = 80.6 bits (88), Expect = 3e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 10457 TAATCATTGCTCGCTGATACTGTCTAATATGTCAGACCCTGAATCGACCACTTGGTAAAA 10516 ||||||||||| |||||||||||||||||| | |||||||||||||||||||| | || Sbjct 32307 TAATCATTGCTTACTGATACTGTCTAATATGACGAACCCTGAATCGACCACTTGGCAGAA 32366 Query 10517 TA 10518 || Sbjct 32367 TA 32368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48769741176006