Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006656.1 Length=12682 Score E Sequences producing significant alignments: (Bits) Value seq1757 250 2e-62 seq4789 120 2e-23 >seq1757 Length=74893 Score = 250 bits (276), Expect = 2e-62 Identities = 280/384 (73%), Gaps = 43/384 (11%) Strand=Plus/Plus Query 9748 AATCGCAGGTTATTGTGTCGCTGACAGACATAGACAGAGATCACGAGAAGAGCTTCTATC 9807 || ||| |||||| ||||| || |||| ||||||||||| || |||| || | | ||| Sbjct 63867 AAACGCTTGTTATTCTGTCGGTGGCAGATATAGACAGAGACCATAAGAAAAGTTACCATC 63926 Query 9808 TTTGGACGACTCCCAAGGGA---TCTGAAACGACCTTCGGAAGTTTCGTCGCCAAAATCC 9864 ||||| ||||| ||||||| |||| | ||||||| |||||||||||| ||| |||| Sbjct 63927 TTTGGGTGACTCTCAAGGGACTCTCTGGGATGACCTTCAGAAGTTTCGTCGTCAATATCC 63986 Query 9865 TTGATGTCAGAGAAGAGTTAAGTTTCACTAAAACCCGAGTGATGATTACTAACAAGATTA 9924 ||||| | |||||||| || ||||| |||| ||| |||||| ||| ||||| ||||||| Sbjct 63987 TTGATATTAGAGAAGAATTTAGTTTTACTAGAACAAGAGTGAAGATCACTAAAAAGATTA 64046 Query 9925 CGGAAACTTCGCGGGAGATTACCAATTTTTGGTTCACTGACTGGCCCGACAACAGTATCC 9984 ||||||||| |||||||||| ||||| Sbjct 64047 CGGAAACTTTACGGGAGATTAGCAATT--------------------------------- 64073 Query 9985 CCACTGGCATGGAAGAGTTTGTGGAGCTACGAAATAAAGTCAACGAAGAACAGGCCAGAC 10044 |||| ||| |||||| |||| |||||||||||||| |||||||||||| ||||| Sbjct 64074 --CCTGGTATGAAAGAGTGATTGGAACTACGAAATAAAGTTAACGAAGAACAGTTCAGAC 64131 Query 10045 TAATAAAGCAAGCTGAAAACGATTCTCAGACTCTGGGGCCTATTGTGGTCCATTGTTCCA 10104 || |||||||||||| ||| ||||| ||| | ||||| | ||||||||||||| Sbjct 64132 CGATGAAGCAAGCTGAAGACGGTTCTCGGACCC-----GCTATTATTGTCCATTGTTCCA 64186 Query 10105 CCGGAACCGGCTGGGCCGGAACTT 10128 |||||||| ||||| ||||||| Sbjct 64187 CCGGAACCAGCTGGAAGGGAACTT 64210 Score = 217 bits (240), Expect = 1e-52 Identities = 185/229 (81%), Gaps = 12/229 (5%) Strand=Plus/Plus Query 10051 AGCAAGCTGAAAACGATTCTCAGACTCTGGGGCCTATTGTGGTCCATTGTTCCACCGGAA 10110 ||||||||||| ||| ||||| ||| | |||||| | ||||||||||||||||||| Sbjct 64222 AGCAAGCTGAAGACGGTTCTCGGACCC-----CCTATTATTGTCCATTGTTCCACCGGAA 64276 Query 10111 CCGGCTGGGCCGGAACTTTTTGTGCGATAAACA-------ACTCGCTAGAACAACTTGAG 10163 || ||||| |||||||||||||||||| ||| || |||||||||||||| Sbjct 64277 CCAGCTGGAAGGGAACTTTTTGTGCGATACACATAACACAACGAACTAGAACAACTTGAT 64336 Query 10164 AAGGAAAAGGAAGTTTCAGTTGGTGAAATAGTTCTCAAAATCAGGAGCCAAAGGCATTCT 10223 || ||||| ||||||| ||| | ||||| |||||| ||||| ||||||||||||||| || Sbjct 64337 AAAGAAAAAGAAGTTTGAGTAGCTGAAAAAGTTCTTAAAATTAGGAGCCAAAGGCATACT 64396 Query 10224 AGTGTTTTCCTTCCAGAACAGTACGCGTTTTGCTACTTAGTGTTGAAAT 10272 ||||||| |||||||||||| || | |||||||||||||| ||| || Sbjct 64397 AGTGTTTACCTTCCAGAACATTATGAATTTTGCTACTTAGTAATGATAT 64445 Score = 154 bits (170), Expect = 1e-33 Identities = 149/190 (78%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 18 TATATAAATTACAACATAATAATACTTGAAGTAAAGAGATCATTTTACAACAAGGACAT- 76 ||||||||||| |||||||||||||||||| |||| ||||| || | ||||||| || Sbjct 63675 TATATAAATTATAACATAATAATACTTGAATTAAAAAGATCGTT---CTACAAGGATATG 63731 Query 77 --TATCTTAAATCCTAATTAAGGTTACTAATAATTTAGTTGACTAAATTTTTAAAATACG 134 | |||||||||||| || | ||| ||||||||| ||| ||||||||| ||||| | Sbjct 63732 AGCAACTTAAATCCTAACTATGTTTAACAATAATTTACTTGCGTAAATTTTTCAAATATG 63791 Query 135 AAACAACTTGTCGGACCGGACTTGTCTTTATCAAAGCTTTTGTGTCGGCTAAATCCAAGT 194 | | ||||| |||| |||| ||||||||||||| |||| ||| |||| | || |||| Sbjct 63792 AGAATTCTTGTTGGACTGGACCTGTCTTTATCAAAACTTTCGTGAGGGCTGATTCTAAGT 63851 Query 195 AGAACTTAAC 204 | || | ||| Sbjct 63852 AAAATTGAAC 63861 >seq4789 Length=9598 Score = 120 bits (132), Expect = 2e-23 Identities = 197/284 (69%), Gaps = 31/284 (11%) Strand=Plus/Minus Query 12205 TTTTA-TTTAGTCCCAACTTAGGTACCTTTTATATTGTTTGGAACATTGTATAATCAACC 12263 ||||| |||||| |||| ||| ||| | |||||| |||| |||| ||||| || |||| Sbjct 327 TTTTAGTTTAGTTCCAAATTAAGTAGCCTTTATAATGTTAGGAATATTGTGCTATGAACC 268 Query 12264 TAGTTCCATAAAAGGTAGC----GTGGATTTTGCTTTGCAGTGTAAAAGTCTATTTATAA 12319 || |||||||| | || | ||| |||||| |||||||| |||| |||| ||| || Sbjct 267 TAATTCCATAATACATACCTATCGTGAATTTTGTTTTGCAGTATAAA--TCTAATTAAAA 210 Query 12320 TTTTTCCTTATTGAAATGAAACAATAACTCTGGTACCATTCCAATNNNNNNNNNNNNNNN 12379 |||||||| |||| ||||||||||| || || | || ||| ||| Sbjct 209 TTTTTCCTCATTGGAATGAAACAATGACCCT-GAACAATTTAAATACTGTGTC------- 158 Query 12380 NNNNACAAGTTAAATATTGATAATTATTATTATAGCACCTTTAGGACAATAGTTTGTACA 12439 | ||||| | || | || | |||| || |||||||||||||||| Sbjct 157 -------ATTTAAA---ACACAAGTTTTGT-----GACCTCTAAGACAATAGTTTGTACA 113 Query 12440 TTATATCAAAAATATGTTATA-TAATCTCTATGTATAAATTAAT 12482 |||||| ||||||| |||| | |||| ||||| |||| |||| Sbjct 112 TTATATAAAAAATAAGTTAAATTAATTTCTATAAATAACATAAT 69 Score = 87.8 bits (96), Expect = 1e-13 Identities = 96/127 (76%), Gaps = 8/127 (6%) Strand=Plus/Plus Query 402 GTTTATGGCCATTCTGGAGCGAGTTTTCATAGAGTTCCCTCTGGCATTGTCTGACCTCCA 461 |||| | || | |||||||||||| | || ||| ||||||||| | |||||||||| Sbjct 421 GTTTGTAGCTAATCTGGAGCGAGTATCGATGGAGATCCCTCTGGTA----CTGACCTCCA 476 Query 462 GGACGAAGCTCACAAACTCTGACGTATTTTTGGGCACGTCGTGGTC----TGGCCAAGCG 517 ||| |||| || ||| || | ||||||| |||||| ||||| || | ||||||| Sbjct 477 GGAAGAAGTTCGAAAAGTCCTAGGTATTTTAGGGCACATCGTGATCCAAGCGTCCAAGCG 536 Query 518 GTGAAAT 524 ||||||| Sbjct 537 GTGAAAT 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40463439130184