Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006659.1 Length=41573 Score E Sequences producing significant alignments: (Bits) Value seq2249 168 2e-37 seq900 96.9 9e-16 seq1387 82.4 2e-11 >seq2249 Length=23881 Score = 168 bits (186), Expect = 2e-37 Identities = 277/394 (70%), Gaps = 28/394 (7%) Strand=Plus/Plus Query 1398 TAATTAGCCGCAAAAATGGGTAAGTACTACTTATAATTACCGATACTTC-ATTGCTTCTG 1456 |||| ||||| |||| |||||||||| || || | |||||| |||||||||| Sbjct 12936 TAATAAGCCGTGCAAATTGGTAAGTACTTATT----TTTCTAATACTTTGATTGCTTCTG 12991 Query 1457 GTTAATGGttttt-ttCGG-CATTAGTATCCCTGAATTATAGAACAATTAAAGTGAATAG 1514 || |||| | ||||| |||| |||||||| |||||| || |||| Sbjct 12992 TTTTCGGGTTATCCTTCGGGCATTGACGTCCCTGAAGTATAGAGCAGATAAA-------- 13043 Query 1515 ATGCTCTGATTGACAATC-----AATTGATATAGTGTTATGA-AACCCCGCGATGTAGCT 1568 |||||||||||| |||| ||| | ||||||||||| | |||||||| ||| ||| Sbjct 13044 -TGCTCTGATTGATAATCTCTCTAATAGTTATAGTGTTATAATAACCCCGCAATGCGGCT 13102 Query 1569 TGTAGTTGAATCACAGCCTACTGTCTTACCAGTGATAGCGTGC--TGCAATAAAATTAAC 1626 | ||||||||||||| | || ||| | |||| ||||| | || |||||| ||| Sbjct 13103 TATAGTTGAATCACACCAGACGATCTAAGCAGTTATAGCTTATATTGTAATAAACATAAA 13162 Query 1627 TACAATGTTCATTGACGGCAAATATCACCACATCTGCGTCGCGCGAAAAGAATGGGCCAT 1686 ||||||| || || |||| ||| || |||||||| ||| | || |||| | ||| Sbjct 13163 GACAATGTCAATCAACTGCAAGTATTACTACATCTGCTTCGTCCCCAAGGAATTGACCAC 13222 Query 1687 ACATAAAACAGAGAGCCTTGAA----AAAATGATGCTTGACAGCTGCTTAGACCATCGAA 1742 ||||||||||| | ||||| |||| || | |||||||||||| | | ||||| Sbjct 13223 GCATAAAACAGAAAAATTTGAAAAATAAAACGACAGTCGACAGCTGCTTATAACGTCGAA 13282 Query 1743 AAAAGATTACCTACATTCACGGAGCCAACACCCA 1776 | ||| | || ||| ||||| ||| | ||||| Sbjct 13283 GACAGACGATCTGCATCCACGGTGCCGAAACCCA 13316 >seq900 Length=525635 Score = 96.9 bits (106), Expect = 9e-16 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 34886 GCGCCTT-GACTATAGAGTTTGCATATATTTTCATGCATATCATATATTCAACCAATCAT 34944 ||||||| || |||| | ||| ||||||||||||||| ||| ||||||| ||||||||| Sbjct 437415 GCGCCTTTGAATATAAAATTTACATATATTTTCATGCTTATTATATATTTGACCAATCAT 437356 Query 34945 ATCACGAATAGATTGGTTTCACATACATTTCATCTCAATTTTA 34987 |||| ||| || ||| |||||||| ||||||| |||| || Sbjct 437355 ATCAAGAACAGTTTGACTTCACATATTATTCATCTGAATTATA 437313 >seq1387 Length=217000 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 34891 TTGACTATAGAGTTTGCATATATTTTCATGCATATCATATATTCAACCAATCATATCACG 34950 |||| |||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||||| Sbjct 201328 TTGAATATAGAATTTACATATATTTTCATGCTTATAATATATTTGACCAATCATATCACG 201387 Query 34951 AAT 34953 ||| Sbjct 201388 AAT 201390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132898961415870