Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006660.1 Length=20197 Score E Sequences producing significant alignments: (Bits) Value seq1125 340 2e-89 seq629 95.1 2e-15 seq4642 91.5 2e-14 seq3608 91.5 2e-14 seq3671 89.7 7e-14 seq1548 89.7 7e-14 seq3278 86.0 8e-13 seq4743 84.2 3e-12 seq5544 80.6 3e-11 seq207 80.6 3e-11 >seq1125 Length=62062 Score = 340 bits (376), Expect = 2e-89 Identities = 256/301 (85%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 4235 TACCGGTTCGTTCTACCACCGGAATATGATGCTTATGATACAAGATGGACATTAAAGTAT 4294 ||||| || |||||||| ||||| |||||||| ||||||||||| |||||||| ||||| Sbjct 59616 TACCGATTTGTTCTACCGCCGGAGTATGATGCGTATGATACAAGGTGGACATTGAAGTAC 59675 Query 4295 CGATCAAATCTGCCGGGACTCGTAGAACTTATGCCCCAAAGTGGTGTTTACGTCAGCTGC 4354 || ||||||||| ||||||||||||||||| || || ||||||||||| |||||| Sbjct 59676 CGCAAAAATCTGCCAGGACTCGTAGAACTTATACCTCATAGTGGTGTTTATGTCAGCCAA 59735 Query 4355 GGAGACCTCAAATACTGTCAGCAAGTATCGAAAGATTGCAAATCATTAGCTCGACGATTA 4414 ||||| ||| |||| ||| |||| |||| |||||||||||||||||||||||||| || Sbjct 59736 GGAGAACTCGCATACCGTCTGCAAATATCAGAAGATTGCAAATCATTAGCTCGACGACTA 59795 Query 4415 TTACCACAAGTCTTTAACAGAAATGCACTGAGTGTTTGTTCATCAATGAGTGAGAAAGCG 4474 ||| || |||| || |||||||||||||||||||||||||||||||| |||||||| | | Sbjct 59796 TTAACAGAAGTATTCAACAGAAATGCACTGAGTGTTTGTTCATCAATAAGTGAGAAGGAG 59855 Query 4475 CAGGCTTCTAATAATGTTGGCTCTAATATAAGGCCTGATTTAGATGATCATGCGTGTTCG 4534 |||||||| | || ||||||||||||| | ||||| || |||||||| | ||||||| || Sbjct 59856 CAGGCTTCAAGTACTGTTGGCTCTAATGTGAGGCCAGAGTTAGATGACCGTGCGTGTGCG 59915 Query 4535 G 4535 | Sbjct 59916 G 59916 Score = 302 bits (334), Expect = 6e-78 Identities = 349/464 (75%), Gaps = 21/464 (5%) Strand=Plus/Plus Query 2311 ATATTAACGG-AAGTATTTTTTATTGTTTCAGATGACACGTAAAAGTGAAAACGAACGAG 2369 ||||| |||| |||| ||||| |||||||||||||||| || || ||| | || |||| Sbjct 59149 ATATTTACGGTAAGTGTTTTTGATTGTTTCAGATGACAAATATAAATGATGATGAGCGAG 59208 Query 2370 CATTCTGTGTTGTTCAATTCATAGAATTGCCTTTTGAAGGTATTGATGATTACGTATGCG 2429 |||||| |||| ||||||||| | ||||||||||| |||||||| || |||| | Sbjct 59209 CATTCTATGTTCTTCAATTCAAATGCTTGCCTTTTGATTGTATTGATAATGACGTGGTTG 59268 Query 2430 TGCCAAACACGTGGCTGATAGTACGTAAAGCGACGGATCAGA-------GGGCC------ 2476 |||| ||||| ||||||||| || |||| || | ||| || ||||| Sbjct 59269 TGCCGAACACCTGGCTGATACTATCTAAACCGGCAGATGAGTCAATGATGGGCCCAATGG 59328 Query 2477 --GTCGTTGCGTACCCTAAAAACGAAGATCCTTTTGATACAAGAGATCGCGCGGAGAGGA 2534 | |||| | |||| ||| | |||||| | | | ||||| ||| ||| | |||||| Sbjct 59329 CAGCCGTTACATACC-TAATACAGAAGATGCATCTATTACAAAAGAAAGCGTGAAGAGGA 59387 Query 2535 AAGAGAGATACAATGATGAGTGGAGATTT-TATATGGCCTCTGTCAAATATGAATCAAGT 2593 |||| | ||||||| | ||||| |||| ||| ||||| |||||||||| ||||| || Sbjct 59388 AAGACAAATACAATAAAGAGTGC-GATTGGTATGTGGCCATTGTCAAATATAAATCAGGT 59446 Query 2594 GAGTTTTAGTAAATGTATTAGTTAATAAATCGTACGTTA-TATCATTGAAATCTATTCAG 2652 ||||| | | ||||| ||||||| || ||| |||| |||| | ||| | | ||||| Sbjct 59447 GAGTTAGAATGAATGTGTTAGTTATTAGATCAGGCGTTGGTATCGTAGAAGTATTTTCAG 59506 Query 2653 ATTCAGAACTTCTCATAAATTAAAAGATAATAATGTTGATATAtttttttCAGATTCTTA 2712 ||| ||||| || | | |||||| || |||||| ||||||| ||| ||||||||||||| Sbjct 59507 ATTTAGAACGTCCCTTGAATTAAT-GAAAATAATATTGATATGTTTGTTTCAGATTCTTA 59565 Query 2713 CAGTGATGCAGAATTTTGGATCGCTACGAGAAATGATTACGGAC 2756 |||||||||||||| ||||||| |||| ||||| |||| |||| Sbjct 59566 CAGTGATGCAGAATCTTGGATCACTACAAGAAAAGATTGTGGAC 59609 >seq629 Length=245446 Score = 95.1 bits (104), Expect = 2e-15 Identities = 80/96 (83%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 15288 AAGA-TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGA 15346 |||| ||| ||||||| |||||| ||||| |||||||||||||| || |||| |||| || Sbjct 22800 AAGACTATATATGGGGTATTCCATGCCAACTCAACCACTTTTGAACCCGACCTCTTTCGA 22859 Query 15347 TTTGGCTGAAAGTTTACCATCCTTTTCTACC-CTAT 15381 | || | ||||||| |||| |||||||||| |||| Sbjct 22860 TCTGACCAAAAGTTTTCCATTCTTTTCTACCACTAT 22895 Score = 84.2 bits (92), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 16811 ATAG-GGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGT 16869 |||| |||||||||| |||| ||||||| | || ||| |||| |||| || |||||||| Sbjct 22895 ATAGTGGTAGAAAAGAATGGAAAACTTTTGGTCAGATCGAAAGAGGTCGGGTTCAAAAGT 22836 Query 16870 GGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 ||| || ||||| |||||| |||| ||| || Sbjct 22835 GGTTGAGTTGGCATGGAATACCCCATATATA 22805 >seq4642 Length=20999 Score = 91.5 bits (100), Expect = 2e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 15295 CTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTG 15354 ||||||| |||||| |||||||| |||| |||||| || |||||||| ||| |||| Sbjct 12347 CTATGGGATATTCCAAGCCAAATCGACCAATTTTGAACCCAACCCCTTTCGATCTGGCCA 12288 Query 15355 AAAGTTTACCATCCTTTTCTACCCT 15379 ||||||| |||| |||||||||||| Sbjct 12287 AAAGTTTTCCATTCTTTTCTACCCT 12263 Score = 89.7 bits (98), Expect = 7e-14 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 16813 AGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAAAAGTGGT 16872 |||||||||||| |||| ||||||| |||| ||| |||||||| || |||||| |||| Sbjct 12263 AGGGTAGAAAAGAATGGAAAACTTTTGGCCAGATCGAAAGGGGTTGGGTTCAAAATTGGT 12322 Query 16873 CGATTTGGCGTGGAATGCCCCCTA 16896 ||||||||| |||||| ||| || Sbjct 12323 CGATTTGGCTTGGAATATCCCATA 12346 >seq3608 Length=122638 Score = 91.5 bits (100), Expect = 2e-14 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | ||| |||||||| |||| ||||||| |||| ||| ||| ||| || || Sbjct 56260 GTTTTTTAAAGGTTAGAAAAGAATGGAAAACTTTTGGCCAGATCGAAATAGGTTGGGTTC 56201 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCC 16893 |||||||||||||||||| |||||| |||| Sbjct 56200 AAAAGTGGTCGATTTGGCATGGAATACCCC 56171 Score = 87.8 bits (96), Expect = 2e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 15298 TGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGAAA 15357 ||||| |||||| |||||||| ||||||||||| || ||| ||| ||| |||| ||| Sbjct 56170 TGGGGTATTCCATGCCAAATCGACCACTTTTGAACCCAACCTATTTCGATCTGGCCAAAA 56229 Query 15358 GTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 |||| |||| |||||||| ||| | |||||| Sbjct 56230 GTTTTCCATTCTTTTCTAACCTTTAAAAAAC 56260 >seq3671 Length=43759 Score = 89.7 bits (98), Expect = 7e-14 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | ||||||||||| |||| ||| ||| |||| ||| |||||| | || || Sbjct 28312 GTTTTTCAAAGGGTAGAAAAAAATGGAAAATTTTTGGCCAGATCGGAAGGGGACGGGTTC 28253 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTAT 16897 ||||||||||| |||||| |||||| |||| ||| Sbjct 28252 AAAAGTGGTCGGTTTGGCATGGAATACCCCATAT 28219 Score = 87.8 bits (96), Expect = 2e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 15293 ATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGC 15352 || ||||||| |||||| |||||| | ||||||||||| || | |||||| ||| |||| Sbjct 28217 ATATATGGGGTATTCCATGCCAAACCGACCACTTTTGAACCCGTCCCCTTCCGATCTGGC 28276 Query 15353 TGAAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 ||| ||| |||| ||||||||||| | |||||| Sbjct 28277 CAAAAATTTTCCATTTTTTTCTACCCTTTGAAAAAC 28312 >seq1548 Length=485651 Score = 89.7 bits (98), Expect = 7e-14 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 15297 ATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGAA 15356 |||||| |||||| |||||||| |||||||| || |||||||||||| ||| | || || Sbjct 301703 ATGGGGTATTCCATGCCAAATCGACCACTTT-GAACCTGACCCCTTTCGATCTAGCCAAA 301645 Query 15357 AGTTTACCATCCTTTTCTACCCTATCAAAAA 15387 ||||| ||| ||| |||||||| | ||||| Sbjct 301644 AGTTTCTCATTCTTGTCTACCCTTTGAAAAA 301614 Score = 89.7 bits (98), Expect = 7e-14 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 16805 TTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCA 16864 ||||| | |||||||| ||| ||| ||||||| || | ||| |||||||||||| || Sbjct 301614 TTTTTCAAAGGGTAGACAAGAATGAGAAACTTTTGGCTAGATCGAAAGGGGTCAGGTTC- 301672 Query 16865 AAAGTGGTCGATTTGGCGTGGAATGCCCC 16893 ||||||||||||||||| |||||| |||| Sbjct 301673 AAAGTGGTCGATTTGGCATGGAATACCCC 301701 Score = 86.0 bits (94), Expect = 8e-13 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 16806 TTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTCAA 16865 |||| | |||||||||| | |||| |||||||| |||| ||| ||||| || || | || Sbjct 301187 TTTTCAAAGGGTAGAAATGAATGGAAAACTTTCGGCCAGATCGAAAGGCGTAGGGTTTAA 301128 Query 16866 AAGTGGTCGATTTGGCGTGGAATGCCC 16892 ||||||||||||||| |||||| ||| Sbjct 301127 AAGTGGTCGATTTGGTATGGAATACCC 301101 >seq3278 Length=32040 Score = 86.0 bits (94), Expect = 8e-13 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | ||||||||| || |||| ||||||| | || | |||| |||||| || Sbjct 6883 GTTTTTCAAAGGGTAGAATAGAATGGAAAACTTTTGGTCAGAG--AAAGAAGTCAGGTTC 6940 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTAT 16897 |||||||||||||||||| |||||| |||| ||| Sbjct 6941 AAAAGTGGTCGATTTGGCATGGAATACCCCATAT 6974 Score = 84.2 bits (92), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 15296 TATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGCTGA 15355 ||||||| |||||| |||||||| ||||||||||| |||||| |||| | || | | Sbjct 6973 TATGGGGTATTCCATGCCAAATCGACCACTTTTGAACCTGACTTCTTT--CTCTGACCAA 6916 Query 15356 AAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 |||||| |||| || ||||||||| | |||||| Sbjct 6915 AAGTTTTCCATTCTATTCTACCCTTTGAAAAAC 6883 >seq4743 Length=38026 Score = 84.2 bits (92), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 15289 AGATATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATT 15348 |||||| ||| | | |||||| |||||||| ||||||||||| || || |||||| ||| Sbjct 28084 AGATATATATAGAGTATTCCATGCCAAATCGACCACTTTTGAACCCGA-CCCTTTCGATC 28026 Query 15349 TGGCTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 |||| ||| ||| |||| ||||| ||||| | |||||| Sbjct 28025 TGGCCAAAAATTTTCCAT-TTTTTCCACCCTTTGAAAAAC 27987 Score = 80.6 bits (88), Expect = 3e-11 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | ||||| ||||| |||| ||| ||| |||| ||| |||||| || || || Sbjct 27987 GTTTTTCAAAGGGTGGAAAAA-ATGGAAAATTTTTGGCCAGATCGAAAGGG-TCGGGTTC 28044 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTATAT 16903 |||||||||||||||||| |||||| | |||| ||||| Sbjct 28045 AAAAGTGGTCGATTTGGCATGGAAT--ACTCTATATATAT 28082 >seq5544 Length=55823 Score = 80.6 bits (88), Expect = 3e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 15293 ATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGGC 15352 || ||||||| |||||| || ||||||||||||||| | | ||| ||||| ||| |||| Sbjct 3691 ATATATGGGGTATTCCATGCTAAATCAACCACTTTTAAACTCGACGCCTTTCGATCTGGC 3750 Query 15353 TGAAAGTTTACCATCCTTTTCTACCCT 15379 ||||||| | || |||||||| ||| Sbjct 3751 CAAAAGTTTTCTATTCTTTTCTAGCCT 3777 >seq207 Length=109948 Score = 80.6 bits (88), Expect = 3e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 16804 GTTTTTGATAGGGTAGAAAAGGATGGTAAACTTTCAGCCAAATCAAAAGGGGTCAGGGTC 16863 |||||| | |||||||||||| | ||||||| |||| ||| ||| | ||| || | Sbjct 71333 GTTTTTCAAAGGGTAGAAAAGAAAATAAAACTTTTGGCCAGATCGAAAAGCGTCGGGTCC 71274 Query 16864 AAAAGTGGTCGATTTGGCGTGGAATGCCCCCTATGTA 16900 |||||||||||||||| | |||||| |||| ||| || Sbjct 71273 AAAAGTGGTCGATTTGACATGGAATACCCCATATATA 71237 Score = 80.6 bits (88), Expect = 3e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 15292 TATCTATGGGGCATTCCACGCCAAATCAACCACTTTTGACCCTGACCCCTTTTGATTTGG 15351 ||| ||||||| |||||| | |||||| |||||||||| || ||| | ||| ||| ||| Sbjct 71237 TATATATGGGGTATTCCATGTCAAATCGACCACTTTTGGACCCGACGCTTTTCGATCTGG 71296 Query 15352 CTGAAAGTTTACCATCCTTTTCTACCCTATCAAAAAC 15388 | ||||||| | |||||||||||| | |||||| Sbjct 71297 CCAAAAGTTTTATTTTCTTTTCTACCCTTTGAAAAAC 71333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 64505837954880