Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006661.1 Length=11186 Score E Sequences producing significant alignments: (Bits) Value seq1786 244 8e-61 seq6253 111 1e-20 >seq1786 Length=88213 Score = 244 bits (270), Expect = 8e-61 Identities = 160/175 (91%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 6387 CGATCGAGAATCATAGTAGAAAAGTAATTTAAGTTACCGACTACTAAAATAATTTAAAAA 6446 |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 85336 CGATCGAGAATCTTAGTAAAAAAGTAATTTAAGTTACCGACTACCGTAATAATTTAAAAA 85395 Query 6447 TTTTGCTTACGTAAGATTTGTCTACTAGCGCCCTCCCCCCTAAGTAAGCATACATAGAGA 6506 |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||| Sbjct 85396 TTTTGCTTACGTAAGATTTGTCTACTAGCGCCCT-CCCCCTAAGTAAGTATGCATAGAGA 85454 Query 6507 TTCATCTTGATccccccccccTAATGAGCGCTTACGTAATTTATGAACAGCCCCT 6561 |||| |||| | | ||||||||||||| |||||||||||||||| ||||||||| Sbjct 85455 TTCAGGTTGACCTCTCCCCCCTAATGAGTGCTTACGTAATTTATGGACAGCCCCT 85509 Score = 149 bits (164), Expect = 4e-32 Identities = 140/180 (78%), Gaps = 12/180 (7%) Strand=Plus/Plus Query 5375 TAAGGGGCTATTCATAAATTACGTAAGCATAATTTGGAGCATTTTATAANNNNNNNNNNN 5434 || |||||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct 84951 TATGGGGCTGTTCATAAATTACGTAAGCACAATTTTGAGCATTTTATAACCCTCCCTCCC 85010 Query 5435 NNATGATAAGCATTAGTAAAATTTTCAACTGAT-ACATCCACCCCCC---TCTGAAATCT 5490 ||||||||||||||||| ||||| ||||||| ||| || |||||| | ||||||| Sbjct 85011 CCATGATAAGCATTAGTAAGATTTTGAACTGATAACACCCCCCCCCCCCACCCGAAATCT 85070 Query 5491 TACGTAAGATA----TACATCAATTTTGGGCTTTCAATAA----GTTAAAAAATATTTTT 5542 ||||||||||| ||||| ||||||||| || ||||| |||| ||||||||||| Sbjct 85071 TACGTAAGATATAGGTACATGAATTTTGGGTATTAAATAATTATGTTACAAAATATTTTT 85130 >seq6253 Length=37147 Score = 111 bits (122), Expect = 1e-20 Identities = 134/186 (72%), Gaps = 21/186 (11%) Strand=Plus/Plus Query 10992 ACGAAATTGCCACATTCCGGCTACGTCGGGCAGAAAAATAGTATACACACCTTGGCCAGT 11051 || || ||| | | ||||| || ||||| | |||||||||||||||||| | | | |||| Sbjct 36471 ACAAAGTTGGCGCTTTCCGCCTCCGTCGAGGAGAAAAATAGTATACACATCATAGGCAGT 36530 Query 11052 AAAAAGTAAACCCTCAGACCACATGTTTGTCAACCTCGACTTCACCTCGGCCAACAATCA 11111 ||| || ||| ||||||| | |||| ||||||||||||| | Sbjct 36531 AAATAGGAAAGCCTCAGAA------------------GGCTTCGCCTCGGCCAACAAGTA 36572 Query 11112 CATGTGATCTGAGACtttttttATTTTACTGGCCTAGGTATGTGATATACTATTTAGCCA 11171 |||||||||||||| ||||||| ||||||| | |||||| |||||||||| | || Sbjct 36573 CATGTGATCTGAGAGATTTTTTACTTTACTG---CATGTATGTAATATACTATTCCGACA 36629 Query 11172 TAGAAT 11177 ||| || Sbjct 36630 TAGGAT 36635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35676684034600