Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006662.1 Length=17477 Score E Sequences producing significant alignments: (Bits) Value seq1105 95.1 1e-15 seq3046 89.7 6e-14 seq2024 87.8 2e-13 >seq1105 Length=309954 Score = 95.1 bits (104), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 11796 CCAAAATATCTCAGAAAATGCCCAAACA--GCTCCTGTTAAAAGCAGAACTCAAAATTCC 11853 || ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||| Sbjct 273034 CCGAAATATCTCAGAAAATGTCCCAACAAAGCTCCTGTTAAAAGTAGAACTCAAAATTCC 272975 Query 11854 AATTTTAAAAGGTT 11867 |||| ||| ||||| Sbjct 272974 AATTCTAAGAGGTT 272961 Score = 84.2 bits (92), Expect = 2e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 11648 AACCTTTTAAAATTGGAATTTTGAGTTTCGCTTTTAACAGGAGCTGTGTTTGGGCATTTC 11707 ||||| ||| ||||||||||||||||| ||||||||||||||| |||| || ||||| Sbjct 272961 AACCTCTTAGAATTGGAATTTTGAGTTCTACTTTTAACAGGAGCTTTGTTGGGACATTTT 273020 Query 11708 TTGAGATATTT 11718 |||||||||| Sbjct 273021 CTGAGATATTT 273031 >seq3046 Length=83782 Score = 89.7 bits (98), Expect = 6e-14 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11628 AAAATTCAATTTCCATGAGGAACCTTTTAAAATTGGAATTTTGAGTTTCGCTTTTAACAG 11687 ||| || || ||| |||| ||| || ||| |||| |||||||||| | |||||||||| | Sbjct 63953 AAATTTAAAATTCAATGAAGAATCTCTTAGAATTAGAATTTTGAGCTCCGCTTTTAACGG 63894 Query 11688 GAGCTGTGTTTGGGCATTTCTTGAGATATTTT 11719 | ||| ||||||| ||||| ||||||||||| Sbjct 63893 GGGCTTTGTTTGGACATTTTCTGAGATATTTT 63862 Score = 84.2 bits (92), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 8/92 (9%) Strand=Plus/Plus Query 11798 AAAATATCTCAGAAAATGCCCAAAC--AGCTCCTGTTAAAAGCAGAACTCAAAATTCCAA 11855 |||||||||||||||||| |||||| ||| || ||||||||| || |||||||||| || Sbjct 63862 AAAATATCTCAGAAAATGTCCAAACAAAGCCCCCGTTAAAAGCGGAGCTCAAAATTCTAA 63921 Query 11856 TTTTAAAAGGTTCCTCACGGGAATTGAATTTT 11887 || ||| || ||| || |||||||||| Sbjct 63922 TTCTAAGAGATTCTTC------ATTGAATTTT 63947 >seq2024 Length=174046 Score = 87.8 bits (96), Expect = 2e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11635 AATTTCCATGAGGAACCTTTTAAAATTGGAATTTTGAGTTTCGCTTTTAACAGGAGCTGT 11694 || ||| ||| |||||| ||| | ||||||||||||| | ||||||||||| || || | Sbjct 155968 AAATTCGATGGAGAACCTCTTAGATTTGGAATTTTGAGCTCCGCTTTTAACATGACCTTT 155909 Query 11695 GTTTGGGCATTTCTTGAGATATTTTG 11720 ||| || |||||| |||||||||||| Sbjct 155908 GTTGGGACATTTCCTGAGATATTTTG 155883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 55802669341920