Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq184 93.3 4e-14 >seq184 Length=348297 Score = 93.3 bits (102), Expect = 4e-14 Identities = 210/313 (67%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 131863 TATGACTCCTGTTAAACCTATGTTGGCTGATGTATGCGAATCTCTAGAAAAAGCAATAGA 131922 ||||||||||||| ||| ||||| ||||| | ||| | || | |||| || || | Sbjct 239564 TATGACTCCTGTTTTACCAATGTTAGCTGAGGCTTGCAAGTCGGTCGAAATGGCTATGAA 239505 Query 131923 TAAATATAAAGATGGAATGTATTCAGAGGTAAAATATGATGGGGAGCGTGTACAAATTCA 131982 |||| | |||| |||| ||| ||| | ||||||||||| ||| | || ||| |||| Sbjct 239504 GAAATGTCCCAATGGCATGTTTTCCGAGATTAAATATGATGGAGAGAGAGTCCAAGTTCA 239445 Query 131983 TAAAAAAGATAATGTATACAATTATTTTAGTAGAAATTTAAAACCTGTTCTTACTCATAA 132042 |||||| | |||| || || |||||| | | | ||||||| || | | ||| | Sbjct 239444 TAAAAAGGGAAATGAATTTAAATATTTTTCTCGTGCTCTAAAACCCGTGATGGCCCAT-A 239386 Query 132043 AATTGATGGATTTGATAAACTGT-TGACTGATGCATTTCCCACAGCAAAAAACTTCATTT 132101 || | | | || | | | | | | || | || ||||| | || | | | || |||| Sbjct 239385 AAGTCAGTCACTTTAAAGATTATCTCCCTCAAGCTTTTCCAAAAGGAGATGATTTAATTT 239326 Query 132102 TAGATGCGGAATTAATAATGATAGATACAAAATCAAATTCATTTTTACCATTTGGTTCAT 132161 |||| || ||| | ||||| ||||| || | | | |||||||||||| | | Sbjct 239325 TAGACGCAGAAGTTTTAATGGTAGATGTGAAGACCGGTAAACCATTACCATTTGGTACTT 239266 Query 132162 TAGGTATACATAA 132174 | || ||||| || Sbjct 239265 TGGGAATACACAA 239253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531845874593640