Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq538 489 2e-133 seq1957 87.8 2e-12 >seq538 Length=46986 Score = 489 bits (542), Expect = 2e-133 Identities = 1190/1788 (67%), Gaps = 22/1788 (1%) Strand=Plus/Plus Query 61973 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 62032 ||| | |||| ||| || | || |||||||| | | | || ||||| ||||||| Sbjct 41428 TTTAACTTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAA 41487 Query 62033 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62092 |||||||||||| ||||| | || | |||| | || ||||| ||| |||| ||| Sbjct 41488 ATAGTACATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTT 41547 Query 62093 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62152 |||| | || || |||| ||| ||||| | || ||||| ||||| || || ||||| Sbjct 41548 TCCATAATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCC 41607 Query 62153 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 62211 || ||||||||||||| ||| | || || || ||||||||||| || || || || Sbjct 41608 TCTATCTGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAA 41667 Query 62212 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTGCCATAA 62268 || ||| || | || ||||| ||| |||| || || |||||| | || | Sbjct 41668 GTCCCTT-ATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTA 41726 Query 62269 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328 || ||| || || || |||| |||||| | | ||||||| || | | |||||| Sbjct 41727 TCAAATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGAT 41786 Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388 | ||||| |||||||| || ||||| ||||| | || |||||| || ||| | | Sbjct 41787 GGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATG 41846 Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 |||| | || ||||||||||| | || || || || || ||||| ||||| || || | Sbjct 41847 GTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTA 41906 Query 62449 CCAATAAACTATTTCTAAGACCGTATGTTCTG-ATTTTATCTTTTAGAGGTTCCCAATTC 62507 ||| | ||| | |||||| ||| | || | ||| ||||||| | ||||| | Sbjct 41907 ACAAAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTCTTTTAAGGCAGTCCAATCC 41964 Query 62508 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 62566 || ||||| | || ||||| ||| || | ||| || | | Sbjct 41965 CACAGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGA 42024 Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626 | ||| |||| || ||| ||||||||||| || | ||||||||| || ||||| Sbjct 42025 C-TTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAA 42083 Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 62686 || || || || || ||||| || || | | ||| || |||||| || || Sbjct 42084 AGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTC 42143 Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 | | ||| | | | | | ||| || || |||||||| |||||||| || || ||||| Sbjct 42144 ATAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGG 42203 Query 62747 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 |||||| || |||| || | | |||||||| | ||||| | |||| ||| ||||| Sbjct 42204 CCTATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAAT 42263 Query 62807 TTTATTGAGATTTCTGACAATTACTTTGA-CCACATCCTTCAGTTTGAGAAAATCAAATC 62865 ||||| | |||| || | | ||| | || | || | ||| |||||| ||| Sbjct 42264 CTTATTTAAATTT-TGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAG 42322 Query 62866 GCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62925 || | |||||||| || | || | || || | ||| || || || || |||| Sbjct 42323 TTTTATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCAT 42382 Query 62926 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 62985 || | ||| | | || || |||||||| || || || || ||||| || | || Sbjct 42383 CAGGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGAT 42442 Query 62986 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63045 ||| ||||||||| ||| |||| || | ||| ||||| | || |||| || || |||| Sbjct 42443 TTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTT 42502 Query 63046 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 63105 ||| || | |||||| || |||||||| | || | || | | | ||| || Sbjct 42503 CAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAA--CTTGTTTTACATA 42560 Query 63106 TCCTTTCTCT--TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63163 | ||| ||| ||| || | ||| || ||| || || || |||||| || | Sbjct 42561 GCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAATCAGC 42620 Query 63164 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63223 ||||||||| || | | |||||||| | ||| | | | | | | || ||||| Sbjct 42621 CAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTTT 42680 Query 63224 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGT 63282 |||||| | ||| || ||||| | ||| ||| |||| ||||| | || ||| || | Sbjct 42681 CATAAACAAATCTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTACTTCTTCTT 42739 Query 63283 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63342 | || ||||||||||| | ||| | || | | | ||| | ||||| |||||||| | Sbjct 42740 TACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAAT 42799 Query 63343 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63402 | | || | ||||||| |||||||| || || ||||| | ||||| || ||||||| Sbjct 42800 ACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTAT 42859 Query 63403 TATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGC 63462 |||| ||||| ||||| |||| || ||| || || || ||||| ||||| | ||||| Sbjct 42860 TATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAG 42919 Query 63463 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 |||| | || | || | | | | ||| | ||| || || || || || || || Sbjct 42920 TTCCTTTAGCTCTTATGCAATGC-ACATGA-ACACCGATACCTCCAGCTGACTTGGAAAT 42977 Query 63521 TAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 |||||| ||| |||||| || ||||| || || || || || ||||| |||| | Sbjct 42978 TAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTAC 43037 Query 63581 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63640 || ||||| ||||| ||| | | ||| | ||| ||| | || || || Sbjct 43038 AAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGC 43097 Query 63641 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63700 || ||||| |||||||||| | | |||||| || | ||||||| |||||||| Sbjct 43098 ATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTTC 43157 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || || || || || |||||||| | ||| ||||| |||| ||| Sbjct 43158 CCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 63755 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 ||||||||||||||||||||| || ||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 63815 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTAT 63874 | ||| || || || |||| ||| | |||| |||| | || |||| ||| |||| || Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAACAAT 43868 Query 63875 AT 63876 || Sbjct 43869 AT 43870 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 63966 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCC 64025 ||||| ||||| || |||| |||||||| |||| ||| || ||||||||| |||| || Sbjct 44462 TTTTTGGTTTCTTTATGTAAATTTGATATTGCTAATCTAGCAGCTAGAATGCCATAGTCT 44521 Query 64026 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64085 ||||| | || || || ||||| |||| ||||||| | |||| ||| || ||| Sbjct 44522 GGATGATCAGTTGTCATTGTAGCTGCAGTTTCAGCTGCCAAGTTATCCAGTTCGACAGTT 44581 Query 64086 GTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTAT 64126 ||||||||| || || || ||||| |||| || ||| Sbjct 44582 GTTACTCCAGAGTAAATGCCACTTATAACTTTCAAAGTTAT 44622 >seq1957 Length=467265 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||| || || ||| || || | ||| ||||| || || | ||| | Sbjct 419633 CCTCATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTCTTCT 419574 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || |||||| ||||| || ||||| ||||||||||| | Sbjct 419573 TGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAAAG 419514 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33500 | | || | || || || | || ||| || ||||| | |||||| || Sbjct 419513 CTACAATACGTTCACCGAAA--GTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTC 419456 Query 33501 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 |||||||| |||||||| || | || || || |||||||| | | ||| Sbjct 419455 AGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACAAAAAGT 419406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622882872914760