Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_007029.1 Length=6307 Score E Sequences producing significant alignments: (Bits) Value seq6253 116 1e-22 >seq6253 Length=37147 Score = 116 bits (128), Expect = 1e-22 Identities = 267/400 (67%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 1519 TCTTGCATTTTATTACGAATACTGTTCTGAATAGATTGAGTGTCTAATGTAATCCAACCT 1578 ||||||||||| ||||||||| ||||| ||| || | || ||| | | || | | Sbjct 35902 TCTTGCATTTTGTTACGAATAGTGTTCGAAATTAGCTGTGAATC-AATCTCAGCCCAATT 35844 Query 1579 TTCT-CACGGCCGTACTCTTCAACATATGTGAGCAACACTGTTCTTGCAGTTTCATCTAA 1637 || | || | | | || |||||| | | ||| || |||||||| |||||||| Sbjct 35843 TTGTTCAATCGCATGTTTTTTAACATAGTTCAACAAAACAATTCTTGCATGTTCATCTAG 35784 Query 1638 TCCTGGTCTGATAGTTGCTCCTTCGACATCGTAAGCTCKAGCTCTTGACCCGGTTAATGA 1697 || || || | | ||| ||| || | || | || ||| || || ||| || Sbjct 35783 CCCGGGCCTTACACTTGTTCCCTCAAAGTCAAATGCATTGGCTTTTTTTCCAGTTGGAGA 35724 Query 1698 ACAGATGGTCAATGCACTCTTAGTGAAAATTTCGACCAATAACAATCGAGCCAATGATTT 1757 ||| || | ||||| | | || |||||||| || || |||| ||| || | | ||| Sbjct 35723 ACATATACTTAATGCGTTTTCGGTAAAAATTTCTACTAACAACATTCGTGCAAGGGTTTT 35664 Query 1758 GCAATCTTTTGACAATCTCTTGCAATTACTAAGCTTTATGGCATTGATGTAGACATTGGT 1817 || ||| || |||| | | || | ||| || || | || || || || || || | Sbjct 35663 GCTATCCTTCGACATTATTTTACTATTGCTTAGTTGAATTGCGACTATATACACCTTCGA 35604 Query 1818 ATGGGGCATGAGTTCTACAAGTCCCGGAGCCATTTGACGATGCTTTAAGGTCCATCTTGA 1877 || || | |||||| || || || | ||| |||||||||| |||||||||||| Sbjct 35603 ATATGGTAGGAGTTCAACGAGACCACTTTTCTTTTCCCGATGCTTTAGGGTCCATCTTGA 35544 Query 1878 GTCATTTTCATCGTATTCTGGAGGTAAAACAAATTTTCGC 1917 |||||| |||||| ||||| |||||| ||| || ||| Sbjct 35543 GTCATTCGGATCGTACTCTGGTGGTAAAGTAAACTTACGC 35504 Lambda K H 0.635 0.409 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20065335029684