Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_007041.1 Length=13279 Score E Sequences producing significant alignments: (Bits) Value seq3040 109 5e-20 seq1683 98.7 8e-17 seq907 96.9 3e-16 seq2025 89.7 4e-14 seq3192 87.8 2e-13 seq3166 82.4 6e-12 seq5338 80.6 2e-11 >seq3040 Length=159084 Score = 109 bits (120), Expect = 5e-20 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 4262 AGGAAAGTACGACGGGCCCAGGCTTNNNNNNNNNNNNNNNNNACTATGTTGAACTCTGGA 4321 |||||||||| ||||| ||| |||| ||||||| ||||||||| Sbjct 103909 AGGAAAGTACCACGGGGCCAAGCTTAGCCCAGGTTTAGCCCAACTATGTAGAACTCTGGG 103968 Query 4322 CCAAGCTTGTAAGCCAGCCTTGTTCCAGCCTTGGTAGAAGTCTGGAATGATAACTGGGTG 4381 ||||||||| ||||||| |||| |||| |||||||||||||| |||||||||| | | Sbjct 103969 CCAAGCTTGCAAGCCAGGCTTGACCCAGTCTTGGTAGAAGTCTAGAATGATAACGATGGG 104028 Query 4382 CCAAGCCTGGTTGC 4395 |||||| ||||||| Sbjct 104029 CCAAGCTTGGTTGC 104042 >seq1683 Length=202003 Score = 98.7 bits (108), Expect = 8e-17 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 4315 CTCTGGACCAAGCTTGTAAGCCAGCCTTGTTCCAGCCTTGGTAGAAGTCTGGAATGATAA 4374 ||||||||||||| || ||||||| |||| |||| |||||||||||||||||||||||| Sbjct 54895 CTCTGGACCAAGCCTGCAAGCCAGGCTTGGCCCAGTCTTGGTAGAAGTCTGGAATGATAA 54836 Query 4375 CTGGGTGCCAAGCCTGGTTGCC 4396 | | |||| ||||||||||| Sbjct 54835 CGATGAGCCAGGCCTGGTTGCC 54814 >seq907 Length=203647 Score = 96.9 bits (106), Expect = 3e-16 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 4304 ACTATGTTGAACTCTGGACCAAGCTTGTAAGCCAGCCTTGTTCCAGCCTTGGTAGAAGTC 4363 ||||||| |||||||| ||||||||| ||| ||| | || |||| ||||||||||||| Sbjct 74705 ACTATGTAAAACTCTGGGCCAAGCTTGCAAGTCAGGCCTGGCCCAGTCTTGGTAGAAGTC 74764 Query 4364 TGGAATGATAACTGGGTGCCAAGCCTGGTTGCC 4396 |||||||||||| | ||||||| || ||||| Sbjct 74765 TGGAATGATAACAATGGGCCAAGCTTGATTGCC 74797 >seq2025 Length=338624 Score = 89.7 bits (98), Expect = 4e-14 Identities = 104/145 (72%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 4254 ACCCAGATAGGAAAGTACGACGGGCCCAGGCTTNNNNNNNNNNNNNNNNNACTATGTTGA 4313 ||||| | |||||||||| ||||| ||| || | ||||||| | Sbjct 13628 ACCCATACAGGAAAGTACCACGGGGCCAAGCCTGACCCAGGCTTGGCCCAACTATGTAAA 13569 Query 4314 ACTCTGGACCAAGCTTGTAAGCCAGCCTTGTTCCAGCCTTGGTAGAAGTCTGGAATGATA 4373 ||||||| |||||| || ||||| | ||||| |||| ||||||||||||||| |||||| Sbjct 13568 ACTCTGGGCCAAGCCTGCAAGCCGGGCTTGTCCCAGTATTGGTAGAAGTCTGGGATGATA 13509 Query 4374 ACTGGGTGCCAAGCCTGGTTGCCAG 4398 || | |||| |||||| ||||| Sbjct 13508 ACGATGGGCCAGGCCTGG--GCCAG 13486 >seq3192 Length=71926 Score = 87.8 bits (96), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 4304 ACTATGTTGAACTCTGGACCAAGCTTGTAAGCCAGCCTTGTTCCAGCCTTGGTAGAAGTC 4363 ||||||| |||||||| |||||| || ||||| | ||||| |||| |||||||||||| Sbjct 65263 ACTATGTAAAACTCTGGGCCAAGCCTGCAAGCCGGGCTTGTCCCAGTATTGGTAGAAGTC 65322 Query 4364 TGGAATGATAACTGGGTGCCAAGCCTGGTTGCCAG 4398 ||| |||||||| | |||| |||||| ||||| Sbjct 65323 TGGGATGATAACGATGGGCCAGGCCTGG--GCCAG 65355 Score = 78.8 bits (86), Expect = 8e-11 Identities = 67/82 (82%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 4317 CTGGACCAAGCTTGTAAGCCAGCCTTGTTCCAGCCTTGGTAGAAGTCTGGAATGATAACT 4376 |||| |||||| || ||||||| ||||| |||| ||||||||||||||| |||||||| Sbjct 65419 CTGGGCCAAGCCTGCAAGCCAGGCTTGTCCCAGTATTGGTAGAAGTCTGGGATGATAACG 65478 Query 4377 GGGTGCCAAGCCTGGTTGCCAG 4398 | |||| |||||| ||||| Sbjct 65479 ATGGGCCAGGCCTGG--GCCAG 65498 >seq3166 Length=49543 Score = 82.4 bits (90), Expect = 6e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 4304 ACTATGTTGAACTCTGGACCAAGCTTGTAAGCCAGCCTTGTTCCAGCCTTGGTAGAAGTC 4363 || |||| ||||||||| ||||||||| ||||||| |||| |||| |||||||||||| Sbjct 28994 ACAATGTAGAACTCTGGGCCAAGCTTGCAAGCCAGGCTTGACCCAGTCTTGGTAGAAGTT 29053 Query 4364 TGGAATGA 4371 |||||||| Sbjct 29054 TGGAATGA 29061 >seq5338 Length=18571 Score = 80.6 bits (88), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 4304 ACTATGTTGAACTCTGGACCAAGCTTGTAAGCCAGCCTTGTTCCAG---CCTTGGTAGAA 4360 ||| ||| ||||||||||||||||||| |||||| |||| |||| |||||||||| Sbjct 9007 ACTGTGTAGAACTCTGGACCAAGCTTGCAAGCCAAGCTTGGCCCAGTCTTCTTGGTAGAA 9066 Query 4361 GTCTGGAATGATAAC 4375 | ||||||||||||| Sbjct 9067 GCCTGGAATGATAAC 9081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 42370352490006