Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq566 425 5e-114 seq538 159 3e-34 seq5066 105 6e-18 >seq566 Length=99533 Score = 425 bits (470), Expect = 5e-114 Identities = 825/1206 (68%), Gaps = 28/1206 (2%) Strand=Plus/Plus Query 62039 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGCGTTTATCCTAGAAACTTTCCTGTAGAT 62098 ||||| |||| ||| |||||||| |||||||||||||| || || || || || || ||| Sbjct 70269 AAAGTAGTTGGCGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGAT 70328 Query 62099 CGAGTGCCTACTCCTAATCTATCGCATGTTCTCTATGGATTTATTCCTATATGCGGCGGC 62158 || || || | ||| |||||| | || |||| ||||| |||||||| || || || || Sbjct 70329 CGCGTACCAATTCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGA 70388 Query 62159 GACGGCATTAACGACAGTCTCAAGACCATAACCGGTAGTTTTGAAGCTCTTCAGCGGTCG 62218 || ||||||||||||||| | ||| || || ||||| |||| ||||| || || Sbjct 70389 GATGGCATTAACGACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCT 70448 Query 62219 TGTTCGGGTCGAGACGACTTTAAAGTGTCGATTCATGACCCGTGGGCTGCCGTCCAGAAA 62278 || ||||| || ||||||||||| || ||||| || || ||||| ||| | |||||| Sbjct 70449 TGCAGTGGTCGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAA 70508 Query 62279 CCACAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTTGGTCAATTGATG 62338 || || ||| || | ||||||| |||||||||||||| || || |||||| ||||| Sbjct 70509 CCTCAGAAAGGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATG 70568 Query 62339 GCAGCCAAACTGGCGAATCCTCACATTAAAGTGTTACCTTCGATAGGCGGCTGGACATTA 62398 || |||| |||| ||| || | || | | ||||| || || || |||||||| Sbjct 70569 TCATTGAAACAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTG 70628 Query 62399 TCCGATCCGTTCTTTTATTTTCACGATGTGGCCAAACGCAAGATTTTTGTCGATTCCGTC 62458 | ||||||||||| | |||| || | |||| | | || || || || ||| Sbjct 70629 GCTGATCCGTTCTTCTTTTTTACTGACAAGACCAAGAGAACTCGCTTCGTTGACTCAGTC 70688 Query 62459 ATAGAATTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGATTGGGAGTTTCCC 62518 | ||| || | || ||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 70689 AAAGAGTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCT 70748 Query 62519 GGCGGGAAAGGCGCCAATCCCAACGTAGGCGACGTCGAACGCGATCGCGAAACGTACACG 62578 || || |||||||| || || | | | || | ||| || | || ||| Sbjct 70749 GGTGGTAAAGGCGCTAACCCTACCTTTGGAAGCCCAGAA---GACGGTGATGTTTACGTC 70805 Query 62579 ATTCTGTTGAGAGATTTACGCGAAGCCCTCGAC--CGTCTCTCAATCGAAACGAATCGAA 62636 | || ||| || | || ||| || ||| | ||||| || ||| | | | Sbjct 70806 AACCTCATGAAGGAACTCCGTGAAATGCTTGACGAACTTTCTCACTC--AACTGGTAGGA 70863 Query 62637 CGTACGAATTGACTAGCGCGATCAGCGCCGGCGATGACAAAATTGCCGTAGTCGATTACA 62696 ||||||||||| || |||||||| || |||||||| ||||| || |||| Sbjct 70864 AATACGAATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTACA 70923 Query 62697 CTGAAGCGCAAAAATATTTGGATTATAtttttttAATGACATACGATTTCAAAGGAGCTT 62756 |||| ||||| || |||| | ||||| | |||| || || ||||| ||||||| Sbjct 70924 GCAAAGCCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTT 70983 Query 62757 GGTCGAATAGCGATTTGGGATATCAAACGACTCTGTACGCGCCTTCGTTTAACCCTAAAG 62816 |||| || | | |||| | || || || | ||||| || | || ||||||| Sbjct 70984 GGTCTAACGACACTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAG 71043 Query 62817 AGCATTATACGACCGATTTTGCCG-----TTCGTGCTATGCTCAAGCAAAAAGTCGAAAA 62871 | |||||| |||||||||| | | | || || ||||||| || ||| Sbjct 71044 AAACTTATACTACCGATTTTGGTGTAAAATACTTGTTA-GCTCAAG----GTGT-GAACC 71097 Query 62872 C-AAAAAGATTATAGTCGGCGTGGCCATGTACGGTCGAGGTTGGACCGGCGTCGGTGACT 62930 | || ||||| || ||||| ||||| |||||||| || || ||||| |||||| || Sbjct 71098 CGAAGAAGATCATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTC---CACG 71154 Query 62931 TTGTCGACGAAAATAATCCATTTTCCGGCACGGCTAAGGGACCGATCAAAGGTACCTGGG 62990 ||| || || ||||| || | |||| || | ||||| |||| || |||||| Sbjct 71155 GGTACGAGGACAACAATCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGGC 71214 Query 62991 AGGACGGAGTCGTCGATTATAGAGAGATTTTTAATTCTTTTG--TGGGTAAAGACGGCAT 63048 | ||||| || |||||||| ||||| || || ||| || ||| || || Sbjct 71215 AAGACGGTGTAGTCGATTACAGAGAAATAGCGAACGAAATTGCCCAGGGAAAATGGGAAT 71274 Query 63049 TAATCGTTACGATTCCATCGCAAAAGCGGCATACGTCTTTAATAACG-CGACCGGCGATC 63107 | | ||||||| | | ||| |||| ||||||| || | | || | || || || | Sbjct 71275 T--CCATTACGATAACGTAGCACAAGCACCATACGT-GTTCAGACCGTCCACTGGGGACC 71331 Query 63108 TCATAACCTACGACAGTCCTCAGTCGGTTCTGGATAAAGCAAAATATGTTTTGGACTATA 63167 | |||| ||||||| || || || | || |||| ||||| || | ||| Sbjct 71332 TTGTAACTTACGACAACGCTAGATCCGTCATCGAAAAAGGCAAATACGTGAGAAATAATA 71391 Query 63168 ATCTGGGTGGTCTGTTCGCGTGGGAGATCGATGCTGACAACGGATTGCTTCTAAACGCAA 63227 | || || ||||| ||||| ||||| || || ||||| |||||| || || ||||||| Sbjct 71392 AACTCGGCGGTCTATTCGCCTGGGAAATAGACGCTGATAACGGAGATCTACTCAACGCAA 71451 Query 63228 TGAACA 63233 |||||| Sbjct 71452 TGAACA 71457 >seq538 Length=46986 Score = 159 bits (176), Expect = 3e-34 Identities = 707/1097 (64%), Gaps = 32/1097 (3%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || || |||||||| | || || || ||||| || | ||||||||||| || ||||| Sbjct 41447 ACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCAGTTTTC 41506 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGGCC 147233 || ||| | | ||||| |||| || || |||| ||| | ||| |||| | || Sbjct 41507 AATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGTTCAGCT 41566 Query 147234 ACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCC 147293 ||| || ||| | || || |||||||| || | | ||| | ||||| ||||| | Sbjct 41567 ACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGCCATTTGT 41626 Query 147294 AACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGGA 147353 | | ||| | |||||||||| | |||||| | | || | || || | |||| Sbjct 41627 ATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTTTTTTGGA 41686 Query 147354 ATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAAT---TTTTATCATGATATCT 147410 || | ||||||||||||| |||||| ||||| | ||| || ||| |||| || | Sbjct 41687 ATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTTCAT-ATCTTC 41745 Query 147411 GTCGAATA--TACGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGACCACTTGAT 147468 || ||| | | | | || || | | | | | |||||| || || || |||||| Sbjct 41746 ATCCCATAAGTCAGCTTGGGT-TA--AATCTGT-TAAGAGATGATGGTTAACAACTTGAA 41801 Query 147469 ACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACTCGT 147528 |||| || || | || | ||| ||| | || |||||| || || || || || | Sbjct 41802 ACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGATTCAT 41861 Query 147529 TGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAATTGC 147588 | || || || |||||||| || | || || ||||| ||| | ||| | ||||| | Sbjct 41862 TATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAATTAC 41921 Query 147589 GTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATCATTCGATT 147648 | | || ||| | || |||| || ||||| || ||| | ||| |||||| | | Sbjct 41922 GAAGACCATGCTTTGCAATTTTTCTTTTAAGGCAGT-CCAATCCCACAGATCAGTAG--- 41977 Query 147649 GGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCGTAAG 147708 | | | | ||||| ||| | ||||||| || ||||||||| |||||||| ||| Sbjct 41978 GAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCATAAC 42037 Query 147709 AATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTTAGTGCACCATAATAAA 147768 | ||| || | | | || | ||| ||| || || ||||| || | Sbjct 42038 TAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATAGTATA 42097 Query 147769 TAGTTTCTGAAATCTTT-TTATTTAAAT-CTCTAGCCTCTTGGCTGTCGTAGGGCATATC 147826 ||||||| |||| ||| || |||| | | || |||| || || ||||| | ||| Sbjct 42098 TAGTTTC--AAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGG-AAATC 42154 Query 147827 -CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGTCTGA 147885 || | | || | ||| || | ||| |||| |||||| || || || | ||| | | Sbjct 42155 TCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTCA 42214 Query 147886 AATTCG-ATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATTGAGA 147944 ||||| || ||| || | || ||||| || || | || ||||| ||||| | | Sbjct 42215 TATTCGAATTCTT-TGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTTAAA 42273 Query 147945 TTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCGAAGCTTTTAAACTGT 148004 || | ||||| | ||| || | | | | ||| | || ||||| Sbjct 42274 TTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTA------ 42327 Query 148005 TTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTTTC-TCGATT 148063 || | |||| |||| || || || || || || || ||||| ||| ||| || | Sbjct 42328 TTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAGGT 42387 Query 148064 GTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCG-tttt 148122 | | |||| | ||| ||||| | || || |||||| | || | | || | |||| Sbjct 42388 GATG-TATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTAT-AGTGCCAAGATTTT 42445 Query 148123 tttGATTATTTTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGA 148182 |||||||| |||| |||| ||||||| ||| ||| ||||| | ||| || || | Sbjct 42446 TTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAA 42505 Query 148183 CTTGAGTCTCAATAATT 148199 |||| | || || ||| Sbjct 42506 CTTGTGCTTCTATTATT 42522 >seq5066 Length=19128 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || || || | || || || | || || | ||| | ||| | Sbjct 18619 CAAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACC 18678 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||| |||||||| | || ||| |||||| ||||||||||| || || || || Sbjct 18679 ATCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGA 18738 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| ||| | | |||| | || || || || ||||||| | ||| | | ||| || Sbjct 18739 TCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTA 18798 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||||||||||||| | |||||||| || | ||| | || |||| Sbjct 18799 TAACATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGTGGTGGAA 18851 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| | || || ||| | || || ||||| | ||| | Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || |||||| | |||||| ||||||| ||||||||||| || || || ||||| Sbjct 18910 GGATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18969 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTAT 26945 ||| | | || | | ||||| ||||| ||||| | | | | || ||| |||||| Sbjct 18970 ACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCA--GACTAT 19027 Query 26946 AACATTCAAAAAGAATCTAC 26965 || |||||||| || ||||| Sbjct 19028 AATATTCAAAAGGAGTCTAC 19047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478612972123920