Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq538 167 6e-36 >seq538 Length=46986 Score = 167 bits (184), Expect = 6e-36 Identities = 540/825 (65%), Gaps = 20/825 (2%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| || ||||||||| | |||||||||||| |||| || || | ||| | ||| Sbjct 43205 GAACGACCCCAGCATATGCTGATGCGTGTTGCTGTTGGCATACACGGGGAAGATATAGAT 43146 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGC----TCGTGTATTCACGCACGCCACGCC 363563 || || || | || || || | || || | | || ||| ||| ||| | Sbjct 43145 GCAGCTATAAACACTTACAATTTGTTATCTGAAAAATATTTTACTCATGCAAGCC----C 43090 Query 363564 AACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAAT 363623 |||||||| ||||| |||| | || || |||||||||| || ||| || || Sbjct 43089 AACAATGTTTTCTGCTGCGACTCCAAGACCTCAATTGTCTTCTTGTTTCCTTGTAGCTAT 43030 Query 363624 GAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAA 363683 ||| || || ||||| || || | ||| ||||| || | ||||| | |||||||| Sbjct 43029 GAAAGATGACAGTATCGAAGGAATATATGATACACTAAAACAATGTGCATTAATTTCCAA 42970 Query 363684 GAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGC-ACAGAACAGTTACAT 363740 | || || || || ||||| || || || || | | || | || | | ||| || Sbjct 42969 GTCAGCTGGAGGTATCGGTGT-TC-ATGTGCATTGCATAAGAGCTAAAGGA-ACTTATAT 42913 Query 363741 TCGCGGCACAGG-GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 | || ||| ||||| || ||||| || ||||| ||| | | || | | | || | Sbjct 42912 TGCTGGTACAAATGGGATT-TCCAATGGTCTTGTTCCTATGTTAAGAGTCTATAATAACA 42854 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCG 363859 |||| || || || || || || || || ||| || || ||||| ||||| | | Sbjct 42853 CTGCCAGATATGTGGATCAAGGGGGTAACAAACGCCCTGGAGCATTTGCAGTGTATTTGG 42794 Query 363860 AGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGG 363919 | ||| || || ||| | ||||| ||| | || | || || || || ||||| | Sbjct 42793 AACCTTGGCACGCAGATGTCTTTGAATTTTTAGATTTAAAAAAGAATACTGGTAAAGAAG 42734 Query 363920 AATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 || | || ||| | || | |||||||| | ||| | | || |||||||| || | Sbjct 42733 AAGTACGAGCAAGAGAATTATTCTATGCTTTATGGATACCAGATTTGTTTATGAAACGGG 42674 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 | || | | | |||||| || | || || ||| | || || || | | ||| Sbjct 42673 TAGAAAAAAATGAAAATTGGAGTCTTATGTGTCCTCACAACTGCCCTGGATTGGCTGATT 42614 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT-CGT 364098 |||||||| || | || ||| |||| |||||||||||| || ||| ||| || Sbjct 42613 GTTGGGGTGAAGAATTTGAAGCTTTATATGAAAAGTATGAA--CAAGAAAAACGCTATGT 42556 Query 364099 AAGACAA-TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 || |||| ||| |||||| | ||| || || || || | || |||| ||||| Sbjct 42555 AAAACAAGTTCGTGCACAGGTTTTGTGGAAAGCAATAATAGAAGCACAAGTTGAAACAGG 42496 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 |||||| ||||||||||| |||||||| |||||| | || || || | | ||||| Sbjct 42495 AACACCATATATGTTGTATAAAGATTCTTGCAACAGAAAAAGTAATCAAAAAAATCTTGG 42436 Query 364218 TACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 || || | |||||||| || || || ||| |||| || || Sbjct 42435 CACTATAAAATGCAGCAACCTTTGCACAGAAATTGTTGAGTATAC 42391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303215647760102