Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq566 284 1e-71 seq538 181 9e-41 seq5066 102 7e-17 >seq566 Length=99533 Score = 284 bits (314), Expect = 1e-71 Identities = 800/1211 (66%), Gaps = 33/1211 (3%) Strand=Plus/Plus Query 55813 TGGATAAAATCGTTGCCGCATATTTTGTCGAGTGGGGTGTTTATCATAGAAACTTTCCTG 55872 |||| ||| | |||| ||| |||||||| || ||||| ||||| | || || || || | Sbjct 70265 TGGA-AAAGTAGTTGGCGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCG 70323 Query 55873 TCACTCGAGTTCCCACTCCTAATCTGTCACACATTCTCTACGGATTCATACCGATATGCG 55932 || ||| || || | ||| ||||| | ||| |||| || || || || || || || | Sbjct 70324 TCGATCGCGTACCAATTCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTG 70383 Query 55933 GCGGCGACGGCATTAACGACAGTCTCAAGACGATAACCGGTAGTTTTGAAGCGCTTCAGC 55992 | || || ||||||||||||||| | ||| || || ||||| |||| ||||| | Sbjct 70384 GTGGAGATGGCATTAACGACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAAC 70443 Query 55993 GATCGTGTTCGGGTCGAGACGACTTCAAAGTGTCGATTCATGACCCGTGGGCTGCGGTCC 56052 | || || ||||| || ||||| ||||| || ||||| || || ||||| || | | Sbjct 70444 GTTCTTGCAGTGGTCGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTAC 70503 Query 56053 AAAAGCCCCAAAAACAAGTGACCGCATGGAACGAACCATACAAAGGCAACTTTGGACAAT 56112 | || || || ||| | | | ||||| |||||||||||||||||||| || ||| Sbjct 70504 AGAAACCTCAGAAAGGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAAC 70563 Query 56113 TGATGGCAGCTAAACTGGCGAATCCCCATGTTAAAGTGCTGCCTTCGATCGGTGGCTGGA 56172 ||||| || |||| |||| || | | || | || ||||| || || || |||| Sbjct 70564 TGATGTCATTGAAACAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGA 70623 Query 56173 CTTTATCCGATCCGTTCTTTTACTTTCACGATGCGGTCAAACGCAAAATTTTTGTCGATT 56232 | || | ||||||||||| | ||| || | ||| | | || || || | Sbjct 70624 CATTGGCTGATCCGTTCTTCTTTTTTACTGACAAGACCAAGAGAACTCGCTTCGTTGACT 70683 Query 56233 CTGTCGTCGAGTTTTTACAGACCTGGAAATTTTTCGATGGTGTCGACATCGACTGGGAGT 56292 | ||| ||||| | || ||||||||||||||||||||||| ||||| || ||||||| Sbjct 70684 CAGTCAAAGAGTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGT 70743 Query 56293 TTCCCGGCGGAAAGGGGGCCAATTCCAACGTCGGCGATGCC--GAACGCGATCGCAACAC 56350 | || || || || || || || | | | | | || ||| ||| || | | Sbjct 70744 TCCCTGGTGGTAAAGGCGCTAACCCTACCTTTG--GAAGCCCAGAAGACGGT-----GAT 70796 Query 56351 GTACACG--ATTCTGTTACGAGATTTACGCGAAGCGCTAGACCGACTAAGCCTCGAAACG 56408 || ||| | || | || | || ||| ||| ||| ||| | | ||| Sbjct 70797 GTTTACGTCAACCTCATGAAGGAACTCCGTGAAATGCTTGACGAACTTTCTCACTCAACT 70856 Query 56409 AATCGAACATACGAGCTAACCAGCGCCATTAGCGCCGGCGATGACAAAATCACGGTCGTC 56468 | | | |||||| | || || || ||||| || ||||||||| ||| || Sbjct 70857 GGTAGGAAATACGAATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTT 70916 Query 56469 GACTACACAGCCGCTCAAAAATATTTAGATTATAtttttttGATGACATACGATTTTAAA 56528 ||||||| || ||||| || | || | ||||| |||||| || || || || Sbjct 70917 GACTACAGCAAAGCCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAG 70976 Query 56529 GGCGCTTGGTCGAATAGCGATCTGGGCTATCAGACGACTTTGTACGCGCCTGCGTTTAAT 56588 || |||||||| || | |||||| | ||||| |||| ||||| || | | ||| Sbjct 70977 GGAGCTTGGTCTAACGACACTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAAT 71036 Query 56589 CCTAAAGAACACTATACGACCGATTTTGCGGT-TCGTGCTCTGCTTAAACAAAAAGTCGA 56647 ||||||||| ||||| |||||||||| || | || || | | | || || | Sbjct 71037 CCTAAAGAAACTTATACTACCGATTTTGGTGTAAAATACT-TG--TTAGCTCAAGGT-GT 71092 Query 56648 GAA---TAAAAAGATTGTAGTCGGCGTAGCTATGTACGGTCGCGGGTGGACCGGCGTCGG 56704 ||| || ||||| | ||||| || || |||||||| || || ||||| |||||| Sbjct 71093 GAACCCGAAGAAGATCATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTCCA 71152 Query 56705 TGATTTCGTCGACAAAAACAATCCATTTTCCGGCACGGCCAAGGGACCTGTCAAAGGTAC 56764 | | || ||| |||||||| || | |||| || | ||||| ||||| || || Sbjct 71153 CGGGTACGAGGAC---AACAATCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAAC 71209 Query 56765 CTGGGAAGACGGAGTCGTTGATTTTAGAGAAATTTTCAACTCTTTTGTGACTAACAAACC 56824 |||| ||||||| || || |||| |||||||| ||| | || | | || Sbjct 71210 CTGGCAAGACGGTGTAGTCGATTACAGAGAAATAGCGAACGAAAT--TGCCCAGGGAA-- 71265 Query 56825 GATGG--AT--CGTTACGATGCTATAGCAAAAGCGTCATACGTTTTTAATAATTCGACAG 56880 |||| || | ||||||| ||||| |||| ||||||| || | || || | Sbjct 71266 AATGGGAATTCCATTACGATAACGTAGCACAAGCACCATACGTGTTCAGACCGTCCACTG 71325 Query 56881 GTGATCTCATCACTTACGACAGTCCCCAG-TCGGTTCTGGATAAAGCAAAGTATGTGTTA 56939 | || || | |||||||||| | | || || || | || |||| || || ||| | Sbjct 71326 GGGACCTTGTAACTTACGACA-ACGCTAGATCCGTCATCGAAAAAGGCAAATACGTGAGA 71384 Query 56940 GACTACAACTTGGGTGGGTTGTTTGCGTGGGAAATCGATGCAGATAACGGATTACTTTTA 56999 | | || | || || | || || |||||||| || || ||||||||| || | Sbjct 71385 AATAATAAACTCGGCGGTCTATTCGCCTGGGAAATAGACGCTGATAACGGAGATCTACTC 71444 Query 57000 AACGCAATGAA 57010 ||||||||||| Sbjct 71445 AACGCAATGAA 71455 >seq538 Length=46986 Score = 181 bits (200), Expect = 9e-41 Identities = 930/1439 (65%), Gaps = 67/1439 (5%) Strand=Plus/Plus Query 131864 ACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTC 131923 || || |||||||| | ||| ||||| || ||||| | |||||| ||||| || || ||| Sbjct 41447 ACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCAGTTTTC 41506 Query 131924 AAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCC 131983 || || ||| ||||| ||| ||||| || | ||| || || | || | || Sbjct 41507 AATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGTTCAGCT 41566 Query 131984 ACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTC 132043 ||| | ||| | || ||||||||||| || | | ||| || ||||| ||||| || Sbjct 41567 ACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGCCAT-TTG 41625 Query 132044 AACAATACTTTCTGCT-TAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGG 132102 | | | ||| || |||||||||| | |||||| | | || | | | | ||| Sbjct 41626 TATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTTTTTTGG 41685 Query 132103 AATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGAT-----AATTTTCATCATCAGT 132157 ||| | || ||||| |||| |||||| ||||| | || |||||| |||| | Sbjct 41686 AATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTT--TCATATCT 41743 Query 132158 TCTGTCGAGTA--CACGTTGCAGTCTACGAGTTTATCGACGAGATGTTGATTTACTATTT 132215 || | | | || ||| | || | | | | | |||||| || || || | || Sbjct 41744 TCATCCCATAAGTCAGCTTG--GGTTA--AATCTGT-TAAGAGATGATGGTTAACAACTT 41798 Query 132216 GATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGATT 132275 || | ||||| ||||| || | ||| ||| | || |||||| || || || |||| Sbjct 41799 GAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGATT 41858 Query 132276 CGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAGGCAATCAATAATGAAT 132335 | || ||||| | ||| || ||||| | || || ||||| || | ||| | |||| Sbjct 41859 CATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAAT 41918 Query 132336 TGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTCG 132395 | || || || || | || |||| | |||||| || ||| | |||||||||| | | Sbjct 41919 TACGAAGACCATGCTTTGCAATTTTTCTTTTAAGGCAGT-CCAATCCCACAGATCAGTAG 41977 Query 132396 ATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTAT 132455 ||| | | ||||| ||| | |||||| || |||||||||| ||| | || Sbjct 41978 ---GAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCAT 42034 Query 132456 AAGAATCGTATGCTCCGT-GTAATTTGGCAAGTTCTATGCTCTGACTC-AGGGCACCATA 132513 || | ||| | || | | | || ||| ||| || | || | || ||||| Sbjct 42035 AACTAGAGTAAACACCTTCCTTCTCTGCCAA-TTCACAACT-AGCTTCTAAAGCTCCATA 42092 Query 132514 ATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAA 132573 || ||||| || | |||| | ||| | | |||||| || ||| || ||||| || Sbjct 42093 GTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGG-AA 42151 Query 132574 ATTTAA--AATAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGT 132631 || | | || | | || ||||| || | |||||||| ||||| || || || |||||| Sbjct 42152 ATCTCATTAACA-CAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGT 42210 Query 132632 TTAAAATTCG-ATACTTGTGCGCTAGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATT 132690 || | ||||| || ||| ||| | || ||||| ||||| || || || ||||| Sbjct 42211 TTCATATTCGAATTCTT-TGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATT 42269 Query 132691 GAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTCAAAGTTTTTAGT 132750 | ||| | || ||| | ||| || | | || || ||| | ||| ||||| Sbjct 42270 TAAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTA-- 42327 Query 132751 CCTTTTGTTGGCA--AAACA-ATTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTC 132807 |||| || ||||| ||| || || || || || |||||||| || || || Sbjct 42328 --TTTT-----CAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTC 42380 Query 132808 TTTA--TTATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTCGAATAACTCCC 132865 | | | || |||||| || ||||||| || | || ||| | || | | || Sbjct 42381 ATCAGGTGAT--GTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTAT-AGTGCC 42437 Query 132866 AAG-tttttttGATT-GTTTTTCTCGTTTACGTTATCTTTATGCAACATGTACGGACCTC 132923 ||| ||||||||||| ||||||| ||| |||||||| |||||| || || || Sbjct 42438 AAGATTTTTTTGATTACTTTTTCT-GTTGCAAGAATCTTTATACAACATATATGGTGTTC 42496 Query 132924 CGGTTTCGACCTGAATTTCGATAATT--TTTCTGTGAAGATCTAACGCCAAAATTTGTTC 132981 | ||||| || || ||| || ||| |||| || | || || || ||||| Sbjct 42497 CTGTTTCAACTTGTGCTTCTATTATTGCTTTC-CACAAAACCT-GTGCACGAACTTGTTT 42554 Query 132982 T--TTAAACTTGCCCTGAGTCTCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAG 133039 | || || || || || || |||| ||||| ||||||||||| || | Sbjct 42555 TACATAGCGTTTTTCT-TGT-TCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAA 42612 Query 133040 CAGTCGTTCAAACCGGGACACTCGTCAGGACACATCAATGACCATTTTTC-TCCTGCGCT 133098 || || ||| || || || | || ||||||||| | ||| ||||| | | || Sbjct 42613 CAATCAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCT 42672 Query 133099 CACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCAT 133158 |||| |||||| ||||| ||| |||| | ||| | ||||| || | || || | Sbjct 42673 -ACCCGTTTCATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGC--TCGT 42729 Query 133159 A--TCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAA 133216 | ||||| || |||| ||| || || ||||| ||| | ||||| |||||| Sbjct 42730 ACTTCTTCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAA 42789 Query 133217 GGCTCGATATATACGGCCAAAGCGCCTTTCC---TTTTACCTCCCTGATCCACATGTCT 133272 || || | ||| || || || || || | | ||||| || |||||||||| ||| Sbjct 42790 GGTTCCAAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCT 42848 >seq5066 Length=19128 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | ||||| | ||||| || | Sbjct 18619 CAAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACC 18678 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| |||||||| | || ||| |||||| |||||||||||||| || || || Sbjct 18679 ATCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCAGA 18738 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || | |||||| | || ||||| || ||||||| ||| | | |||||| Sbjct 18739 TCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTA 18798 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||||||||||||||||||| Sbjct 18799 TAACATTCAAAAAGAATCTAC 18819 Score = 102 bits (112), Expect = 7e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| | || || ||| | || || ||||||| || | Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || |||||| | |||||| ||||||| |||||||||||||| || || ||||| Sbjct 18910 GGATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCA 18969 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAAC-GTCAGCGATTAT 24167 |||| | |||| | | ||||||||||| ||||| | | | || ||| || ||| Sbjct 18970 ACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCA--GACTAT 19027 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || |||||||| || |||||| |||| || || Sbjct 19028 AATATTCAAAAGGAGTCTACACTTCACTTGGT 19059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429892713640455