Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq566 246 3e-60 seq2668 116 3e-21 seq5066 100 2e-16 seq661 91.5 1e-13 >seq566 Length=99533 Score = 246 bits (272), Expect = 3e-60 Identities = 594/887 (67%), Gaps = 33/887 (4%) Strand=Plus/Plus Query 32177 GCGTATTTTGTAGAATGGGGCGTGTACGGGCGCAATTTCCCAATAGACAAAGTGCCGTTG 32236 || |||||||| ||||||||||| ||| | | || ||||| | || || || | Sbjct 70281 GCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATT 70340 Query 32237 CCCAATTTGTCGCATCTGTTGTACGGATTTATTCCTATTTGCGGCGGCGACGGACTAAAC 32296 |||||| | | || || |||| || |||||||| ||||| || || || || | ||| Sbjct 70341 CCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAAC 70400 Query 32297 GATGCCCTCAAAACGATACCG--GGCAGTTTTGAGGCGCTGCAACGTTCGTGCAAAGGCC 32354 || | | ||| || | || || ||||| | || || |||||||| |||| || | Sbjct 70401 GA--CAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTC 70458 Query 32355 GCGCAGACTTTAAGGTTGCCATTCACGACCCTTGGGCCGCAATACAAAAACCGCAGAAGG 32414 ||| |||||||| || | |||||||| || ||||| || |||| ||||| ||||| | Sbjct 70459 GCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAG 70518 Query 32415 GCGTGTCTGCGTGGAACGAACCCTACAAAGGCAACTTTGGCCAATTGATGGCGGCCAAGT 32474 | | || | ||||| ||||| |||||||||||||| || ||| ||||| | || Sbjct 70519 GTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAAC 70578 Query 32475 TGGCAAACCCTCACATAAAAATTTTACCATCTATTGGCGGGTGGACGTTGTCGGATCC-- 32532 || | ||| || | || ||| | || |||||||| || ||||| ||| | ||||| Sbjct 70579 AAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGT 70638 Query 32533 -CTTTTATTTTA-TG-CACGACGCGGAAAAACGGCACGTGTTTGTCGATTCCGTCAAAGA 32589 ||| | ||||| || || ||| || || | || || || || || |||||||| Sbjct 70639 TCTTCTTTTTTACTGACAAGACCAAGAGAA----CTCG-CTTCGTTGACTCAGTCAAAGA 70693 Query 32590 GTTTTTACAGGTTTGGAAATTCTTTGACGGAGTGGACATTGATTGGGAGTTCCCGGGCGG 32649 ||| | || |||||||| || || || || |||||||||||||||||||| || || Sbjct 70694 GTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGG 70753 Query 32650 CAAAGGTGCCAACCCGGCGCTCGGTAACGGGGAGCGCGACGCGCACACGTACATTATTTT 32709 ||||| || ||||| | | || | | || |||| | ||| | | | Sbjct 70754 TAAAGGCGCTAACCCTACCTTTGGAAGCCCAGA---AGACGGTGATGTTTACGTCAACCT 70810 Query 32710 GTTACAAGAATTGCGTTCTATGCTGGACGACCT---TCAATTGCAAACGGGCAAAACGTA 32766 | | ||| | ||| ||||| ||||| || ||| | ||| || | | || Sbjct 70811 CATGAAGGAACTCCGTGAAATGCTTGACGAACTTTCTCACT---CAACTGGTAGGAAATA 70867 Query 32767 CGAGTTGACTAGCGCAATTAGTGCCGGCCACGACAAAATTGCTGTGGTGCAATATGAAGC 32826 ||| ||||| || || || || || |||||||| || || | || ||| Sbjct 70868 CGAATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTA--CAGC 70925 Query 32827 --CGCGCAAAAGTACCTCGATAAAATATTTCTCATGAGTTACGACTTTAAAGGGGCATGG 32884 || ||||| ||| | || | || || || |||||||| ||||| || || || ||| Sbjct 70926 AAAGCCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTTGG 70985 Query 32885 TCTAACACCGATTTGGGCTATCAGACCACTTTGTACGCTCCAAGTTGGAATCCCGATGAA 32944 |||||| | | |||| | ||||| |||| ||||||||| |||||||| | ||| Sbjct 70986 TCTAACGACACTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAGAA 71045 Query 32945 TTGTACACCACAGATCACGCTGTTAAA---TTGTTAACAAGTCAAGGTGTAGCTTCTTAC 33001 || || || ||| | ||| ||| |||||| | ||||||||| | | Sbjct 71046 ACTTATACTACCGATTTTGGTGTAAAATACTTGTTAGC---TCAAGGTGTGAACCCGAAG 71102 Query 33002 AAAATCATTGTCGGCATCGCCATGTACGGTCGCGGGTGGACGGGCGT 33048 || ||||| ||||| | || |||||||| || || ||||| ||||| Sbjct 71103 AAGATCATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGT 71149 >seq2668 Length=134947 Score = 116 bits (128), Expect = 3e-21 Identities = 175/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 109252 GCACGTTTGCGCACTTTTGCAGAATGGCCTCGTGGTTTGAAACAGCAACCCGATAAACTA 109311 || || || ||||| ||| || ||||| || || ||||||| ||||||| |||| Sbjct 31149 GCTCGATTACGCACCTTTAAGGATTGGCCCCGCAGTATGAAACAAAAACCCGAGGAACTT 31090 Query 109312 GCCGAGGCCGGGTTTTATTACACGGGCCAGGGCGATAAAACCAAATGTTTTTATTGTGAC 109371 ||||| || || |||| || || || | || ||||| || || |||||||||||| Sbjct 31089 GCCGAAGCTGGCTTTTTCTATACCGGTAACGGAGATAAGACGTTGTGCTTTTATTGTGAC 31030 Query 109372 GGCGGTTTGAAAGACTGGGAGGCGGACGATGAGCCGTGGAAACTGCACGCGCGTTGGTTT 109431 || ||| | | || |||||| ||||||| |||||| | | || || |||||||| Sbjct 31029 GGGGGTCTTAGGGATTGGGAGAACGACGATGTACCGTGGGAGCAACATGCTCGTTGGTTC 30970 Query 109432 GACCGTTGCCCTTACGTGTTGCTTGTTAAGGGTCGAGATTATGTGCAAAAAATTGTAACG 109491 || || ||| | || || || || || || || ||||| || |||||| || | || Sbjct 30969 GATCGCTGCGCCTATGTACAACTCGTAAAAGGGCGGGATTACGTACAAAAAGTTATTTCG 30910 Query 109492 GAATCGTGT 109500 ||| | ||| Sbjct 30909 GAAGCTTGT 30901 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 109047 CGGATTTTATTATTTGGGTCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAAAT 109106 ||||||||||||| | || || || ||||| ||| | |||||||| || || |||||||| Sbjct 31420 CGGATTTTATTATCTCGGACGAGGAGACGAGGTGAGATGCGCGTTCTGTAAGGTGGAAAT 31361 Query 109107 AATGCGTTGGCTTGAGGGTGACGACCCAGCGGTTGACCATAAAAGATTAGCGCCACAGTG 109166 ||| ||| | || |||||||| || ||| |||||| | ||| ||||| ||||| Sbjct 31360 CATGAAGTGGGTGGAAGGTGACGATCCTGCGAAAGACCATCAGCGATGGGCGCCGCAGTG 31301 Query 109167 TCCGTTC 109173 ||| ||| Sbjct 31300 TCCTTTC 31294 >seq5066 Length=19128 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 || || ||||| ||||| || || || |||||||| || || ||||| | ||| || Sbjct 18617 TTCAAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAA 18676 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 | ||| || | | | | || ||| || ||| || ||||||||| | ||| Sbjct 18677 CCATCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCA 18736 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||||||| | | |||| ||| || || || | ||||||| |||| | ||||| Sbjct 18737 GATCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGAT 18796 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||||||||| ||||| ||||| |||| Sbjct 18797 TATAACATTCAAAAAGAATCTACCTTACATCTGGT 18831 >seq661 Length=180664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 112403 GTTGCCTAGGTCACCGACGTGTCGCTCGGCGGCGTCGGGTGCGCCATGGTCTTGGTTCGT 112462 ||| || || ||||| || |||| | || |||||||| || || |||||||| ||| Sbjct 2812 GTTACCGAGATCACCAACATGTCTGACCGCTGCGTCGGGGGCTCCGTGGTCTTGTTTCAA 2753 Query 112463 GGGGTTAAAATGCTCGCCCGCCGACGTGCACCCGTTGCTAGTGTCGCCAAACTCGTGCAC 112522 ||||| || || || ||||| ||||| ||||| || |||| |||||||| || | Sbjct 2752 AGGGTTGAAGTGAGGACCAGCCGATGTGCATCCGTTTGTATTGTCACCAAACTCATGGAT 2693 Query 112523 GTGAAAACCGTGCAACCC 112540 ||| ||||||||||| || Sbjct 2692 GTGGAAACCGTGCAAACC 2675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425301175967320