Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq566 170 2e-37 seq5066 123 2e-23 seq538 123 2e-23 >seq566 Length=99533 Score = 170 bits (188), Expect = 2e-37 Identities = 343/506 (68%), Gaps = 16/506 (3%) Strand=Plus/Plus Query 23642 CGCCTACTTTGTCGAGTGGGGCGTATATCCCAGACAATTTCCCGTAGACAAAGTGCCCGT 23701 ||| || ||||| || |||||||| || || || | || ||||| || || || | Sbjct 70280 CGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAAT 70339 Query 23702 GCCTAATTTGTCACATTTGCTCTACGGCTTCGTACCTATATGCGGCGGCGAGGGAATTAA 23761 || ||| | | || | || || || || | || || || || || || || ||||| Sbjct 70340 TCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAA 70399 Query 23762 CGACGCTCTCAA---AACCGTGCCGGGCAGTTTCGAGGCGCTGCAGCGTTCGTGCGCGGG 23818 |||| | | || || || || |||||| | || || || ||||| ||| || Sbjct 70400 CGACAGTTTAAAGGAAATCGAA---GGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGG 70456 Query 23819 CCGCGCCGACTTCAAGGTATCCATCCACGATCCGTGGGCAGCTCTTCAGAAGCCGCAGAA 23878 |||| ||||| || ||||| || |||||||| |||||||| | ||||| || ||||| Sbjct 70457 TCGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAA 70516 Query 23879 GGGAGTGTCGGCGTGGAACGAGCCGTATCGTGGAAACTTTGGTCAGTTGATGGCAACGAA 23938 || | || | ||||| || || || || ||||| ||||| ||||| || ||| Sbjct 70517 AGGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAA 70576 Query 23939 ACTGGCGTATCCGCACTTGAAAGTGCTACCTTCGATCGGTGGCTGGACGCTGTCTGATCC 23998 || ||| || || |||| | || ||||| || || || ||||| || ||||||| Sbjct 70577 ACAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCC 70636 Query 23999 GTT-----TTATCACATGCACGAGCCCAGCGTACGCCGTGTGTTTATCGACTCTGTCGAA 24053 ||| || | || || || || || | || | | ||| ||||| ||| || Sbjct 70637 GTTCTTCTTTTTTACTGACAAGA-CCAAGAGAACTCGCTTCGTT----GACTCAGTCAAA 70691 Query 24054 GAGTTTTTGTTAACGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTCCCCGGC 24113 ||||| | ||| |||||||| || || || || |||||||||||||||||||| || Sbjct 70692 GAGTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGT 70751 Query 24114 GGCAAAGGGGCAAATCCCAACGTTGG 24139 || ||||| || || || | | |||| Sbjct 70752 GGTAAAGGCGCTAACCCTACCTTTGG 70777 >seq5066 Length=19128 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | || |||||||||||||| || || || | Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTC--TG 19020 Query 131068 ATGGTGCGCGA--GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||| ||| ||| || || |||||||| || |||| |||||||| || || || | Sbjct 19019 ATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGG 18960 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTT-GAGCTGCTCCACAGTATCGGTGGACTCG 131184 | || ||||||||||| ||| | | ||||| || | ||| | |||||| | | || Sbjct 18959 GAATGCCTTCTTTGTCT-TGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCA 18901 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | |||| || | |||||||| || |||||||| |||||||||||||| Sbjct 18900 ACTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||||| ||| || || ||||||||||| |||||| Sbjct 18849 CCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGAT 18790 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || |||||||| || || | || ||||| ||||| || || || Sbjct 18789 AAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 18730 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| | | |||| | | | || | ||||||| | || | Sbjct 18729 ATGCCTTCTTTGTC-TTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAAC 18671 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| || ||||| || |||||||||||||| Sbjct 18670 TTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 >seq538 Length=46986 Score = 123 bits (136), Expect = 2e-23 Identities = 462/717 (64%), Gaps = 13/717 (2%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 || || || || |||||||| || | || || || || || | ||| || || || Sbjct 41786 TGGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAAT 41845 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 ||||||||||| || ||||| || || || || || || | || || ||||| || Sbjct 41846 GGTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCT 41905 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | ||| | ||||| || || || ||||| | | | ||| |||| | | ||||||| Sbjct 41906 AACAAAAGGGAATTACGAAGACCATGCTT-TGCAATTTTTCTTTTAAGGCAGTCCAATCC 41964 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGG 145294 || || ||| || || |||||||||||| || || |||||||| | || || || Sbjct 41965 CACAGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGA 42024 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGA 145354 || || | | | | |||| || | | || | || ||||| || || | | Sbjct 42025 CTTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAA 42084 Query 145355 GCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCG 145414 || || | || || || || ||||| || || | || ||||| || ||||| Sbjct 42085 GCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCA 42144 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 || || | | || | ||||| ||||| || | ||||| | || | ||| || ||| Sbjct 42145 TAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGC 42204 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATAGGATATCGATTACGGTCGATAAT 145533 | ||||||||| || | || || | || | | ||||| ||| || ||||| Sbjct 42205 CTATGTTTCATATT-CGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAAT 42263 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593 ||||| || ||| | || || |||| || || |||| ||| | ||| Sbjct 42264 CTTATTTAAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGT 42323 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 | ||||| | || |||| || || || ||||| ||||| || |||||| Sbjct 42324 TTTATTTTCAACAAACA------TATTAACAGCTATGGACGCTAAATTGCACACTGCCAC 42377 Query 145654 CTCCTCGGCGTCGCTGTAT--TGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTT 145711 || || | || | ||||| | || || || | ||| | ||||| ||||| || || Sbjct 42378 TTCATCAG-GT-GATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTG 42435 Query 145712 CCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 || ||||||| ||||||||||| |||||||| | || || || | ||| || ||| Sbjct 42436 CCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGT 42492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471964058778240