Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008007.1 Length=15812 Score E Sequences producing significant alignments: (Bits) Value seq3217 152 5e-33 >seq3217 Length=8202 Score = 152 bits (168), Expect = 5e-33 Identities = 366/544 (67%), Gaps = 11/544 (2%) Strand=Plus/Plus Query 2518 TTGTCGGAGGGTAATCAAAGTTTTCTCGAGAATATTCAACCAGTTTGAAACGTGTTGCGA 2577 |||||| || |||||| | ||||||| || ||||||||| || || ||| |||| Sbjct 6582 TTGTCGCAGCAGTATCAAATTATTCTCGACAACTTTCAACCAGCCTGCAATGTGATGCGC 6641 Query 2578 ACAATAATGATGAAAATGGCCATATTCACATGCGTCTACCGGAGGCTTCACAAAAACTTC 2637 ||| ||||||||| | || ||||| || || ||| |||||| |||| ||| Sbjct 6642 ACAGTAATGATGATAGTGTCCATACGGGCACGCATCTGTTACAGGCTTTTGAAAAGTTTC 6701 Query 2638 ATAACCCCGGCCAT-CTTCGTTCA-CCAAGTTACACGGGCAGGAGGCGCGTTCACCCTCC 2695 | | ||| | | ||| |||| |||||| ||||||||||| |||| | ||| ||| Sbjct 6702 GAATCTTCGGTCTTTCTT--TTCAACCAAGTGACACGGGCAGGTGGCGAATCGACCTTCC 6759 Query 2696 GAACACATATCCAAATGTACGTGCATTTTGACAAACTTGCTTAGCTTCGGAACGCCTTGG 2755 || || || ||||| |||||||| ||||| || ||||||| | ||| ||| | Sbjct 6760 GAGCAATGATTTAAATGCGTATGCATTTTCACAAAATTCGTTAGCTTGGAAACCCCTGTG 6819 Query 2756 AATTTGTCTATCGCAGGAGGGACTATCCCACCGAACACAGGCAACAAGGAGTCATAATTA 2815 ||||| || | |||| || || |||| || | |||| |||| || || | Sbjct 6820 AATTTCTCCAGGATTGGAGACACGATTTCACCAAAAATAGGCGACAAAGACTCTACGCTC 6879 Query 2816 ATGAGAACGCGATCTTCCTTTATTCTTGAAGAATCGAAGTTGTATTCAATCGCCAATGGT 2875 ||||| | |||||||| | | || ||| | ||||| |||||||| || | ||| Sbjct 6880 ATGAGTATCCGATCTTCTTCCAGTCGTGAGGGGTCGAAATTGTATTCGATGATGATTGGC 6939 Query 2876 TTTCCATTTATAAACATCGATGCACACTGGTAAGTAGATAGTTGCCATAATTTTTCTCGA 2935 || || || || || || | | || | |||| || || || | ||| || | |||| | Sbjct 6940 TTCCCGTTGATGAATATGGTTTCAGTCCGGTATGTCGACAGCTTCCACAA-TGTTCTACA 6998 Query 2936 AAATA-ATCGCTTTC--ATTACCATGGGGCCAAAGCGAGCGGATGAAACATCGATAATCT 2992 || | |||||| || | || || ||| || || | | |||| ||| || |||||| Sbjct 6999 AATGATATCGCTCTCTAAGTA--ATTGGGACAGAGAGCGAGGATAAAATTTCTGTAATCT 7056 Query 2993 TCAAAACACAGAAAGTTCGCCATGTATAGAATCAGCTCCAGCG-GTAATAAATTTGCTTT 3051 | || |||| ||| | ||||| | || | | |||| || ||| ||||||||| Sbjct 7057 TGGAAGCACATGAAGCTGGCCATACAGAGGAAGATGTCCAACGAAAAATCTATTTGCTTT 7116 Query 3052 GACG 3055 |||| Sbjct 7117 GACG 7120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50475178260825