Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq566 233 2e-56 seq1218 87.8 1e-12 >seq566 Length=99533 Score = 233 bits (258), Expect = 2e-56 Identities = 583/881 (66%), Gaps = 21/881 (2%) Strand=Plus/Minus Query 96132 ACTCCAGTCCAGCCGCGACCGTACATGGCCACGCCCACAATAATTTTGCGCGGGTCCACG 96191 || ||||||||||| || |||||||| ||||| || || || || || ||||| ||| Sbjct 71149 ACGCCAGTCCAGCCACGTCCGTACATTGCCACTCCGACGATGATCTTCTTCGGGTTCACA 71090 Query 96192 CCTTGATTTGTGAGCAATTTAACGGCATGGTCCGTGTTGTACAGCTCGTTTGGGTTCCAA 96251 |||||| | | |||| || || || || | || || || || ||||| Sbjct 71089 CCTTGAGCTAACAAGTATTTTACACCAAAATCGGTAGTATAAGTTTCTTTAGGATTCCAT 71030 Query 96252 CTCGGCGCGTACAGTGTAGTTTGGTATCCCAAATCAATGTTTGACCACGCGCCTTTAAAA 96311 || ||||| | | || |||| |||| | ||| ||||| || || || || Sbjct 71029 TCTGGAGCGTATAAAGGTGTCTGGTGCCCCAGAGTGTCGTTAGACCAAGCTCCCTTGAAG 70970 Query 96312 TCGTAGCTCATGAGAAATATTTTGTCGAGGAACTTTTGCGCAACGTCGTATTTTACTACA 96371 || || ||||| || || || | ||| | | | ||||| || | ||| | ||||| Sbjct 70969 TCATAACTCATCAGGAAAATGTGGTCCATGTAGTTTTGGGCTTTGCTGTAGTCAACTACC 70910 Query 96372 GCAATTTTGTCGTGGCCGGCACTGATTGCACTTGTCAACTCGTACGTTTTGCCCGTTTGC 96431 |||||||| || || ||||| || |||||| ||||| | | || ||| Sbjct 70909 TGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTCAATTCGTATTTCCTACCAGTTG-- 70852 Query 96432 AGTTGCAAC--TCGTCTAACATCACGCGCAATTCCTTTAATAGAATGTTGTACGTGTCAG 96489 ||| || ||||| | ||| | || | |||||| | || || ||| ||| Sbjct 70851 AGTGAGAAAGTTCGTCAAGCATTTCACGGAGTTCCTTCATGAGGTTGACGTAAACATCAC 70792 Query 96490 CGTCGCGCTCTTTGTTGCCGAGCGTCGGGTTGGCGCCTTTACCGCCCGGAAATTCCCAGT 96549 |||| ||| | | || | || ||||| ||||||||||| || || || ||||| | Sbjct 70791 CGTCT---TCTGGGCTTCCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCCAAT 70735 Query 96550 CGATGTCCACTCCGTCGAAAAATTTCCAAACCTGCAAAAATTCTCTGACGGAGTCTACAA 96609 | ||||| || || |||||||||||||| || | || ||| |||| ||||| || | Sbjct 70734 CAATGTCAACACCATCGAAAAATTTCCAGGTTTGAAGGAACTCTTTGACTGAGTCAACGA 70675 Query 96610 ACACGCGCCGTTTTTCCGCGTCGTGCATGTAA-----TAGAACGGGTCGGACAGTGTCCA 96664 | || || || ||| || |||| ||||||| || | || |||||| Sbjct 70674 A-----GCGAGTTCTCTTGGTCTTGTCAGTAAAAAAGAAGAACGGATCAGCCAATGTCCA 70620 Query 96665 GCCGCCGATAGACGGCAGAATTTTAAGGTGTGGATTAGCCAGTTTGGCCGCCATCAACTG 96724 || || ||||| || ||||| || |||| || | || |||| | ||||| || Sbjct 70619 TCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTG 70560 Query 96725 ACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGACACGCCCTTTTGCGGTTTTTGTAC 96784 ||| |||||||||||||| || || ||||||| || | || || || ||||| |||| Sbjct 70559 ACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAA 70500 Query 96785 TGCGGCCCAAGGGTCGTGAATAGCAACTTTAAAATCTGAACGGCCCTGGCAAGAGCGTTG 96844 || ||||| || |||||||||| |||||||| || || || |||||| ||||| Sbjct 70499 GGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTG 70440 Query 96845 CAGCGCTTCAAAACTACC--GGGTATGGTTTTAAGGGCATCGTTAAGGCCGTCGCCGCCA 96902 || |||| ||||| || | | | ||| || | ||||||| ||| || || ||| Sbjct 70439 AAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTG--TCGTTAATGCCATCTCCACCA 70382 Query 96903 CAAATGGGTATAAACCCGTACAACAAATGTGACAAGTTGGGCAGCGGCACTTTGTCCACC 96962 ||||| || ||||| || |||| | || | | ||||| | || || || || Sbjct 70381 CAAATTGGAATAAAACCATACAGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACG 70322 Query 96963 GGAAAGTTACGACCATACACGCCCCATTCCACAAAATACGC 97003 || || || | || |||||||||||||||||||| || Sbjct 70321 GGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAATAAGC 70281 >seq1218 Length=74600 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 29344 GGCGGCGTGGGGCTGAATCTAACGGGCGGCAACCACCTCGTTTTGTTGGAGCCGCACTGG 29403 || |||||||| ||||| || ||| | ||||||||| | || |||| ||||||||| Sbjct 37925 GGTGGCGTGGGTCTGAACCTGGTGGGAGCCAACCACCTGCTGCTGCTGGACCCGCACTGG 37866 Query 29404 AACCCGCAGGTGGAGTTGCAGGCGCAGGGCCGCATCCACCGTTTGGGCCAGCGCAAACGC 29463 ||||||||| ||||| |||||| |||| ||| || |||| | || ||| ||| | | Sbjct 37865 AACCCGCAGCTGGAGCAGCAGGCACAGGACCGTATATTCCGTGTCGGGCAGACCAAGCAC 37806 Query 29464 GCGCACGTGTACA 29476 | ||| | |||| Sbjct 37805 GTGCATATCTACA 37793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405047215360390