Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq353 167 2e-36 seq1 140 2e-28 seq5066 134 9e-27 seq2668 107 1e-18 >seq353 Length=141869 Score = 167 bits (184), Expect = 2e-36 Identities = 130/155 (84%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||| || ||||||| || || ||||||||||||||||||||||| ||||| ||||| Sbjct 140064 ATGGGGTCCGTGAACGTCAACCGGAATGTGGCGGACGCGTTCTACCGTTACAAGATGCCT 140123 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 ||||| ||||||||||| ||||| ||||| ||||| || || || |||||||| |||||| Sbjct 140124 CGCATTTGCGCCAAGGTGGAGGGCAAGGGGAACGGCATCAAGACGGTCATTGTGAACATG 140183 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCAC 6316 || ||||| || || ||||| || ||||| || || Sbjct 140184 CCCGAAGTGGCAAAAGCGCTGGGTCGCCCCGCTAC 140218 Score = 98.7 bits (108), Expect = 7e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 ||||| || ||||| || |||||||||||||| ||| |||| || || || |||||||| Sbjct 141296 TTCGGCTGTGAACTGGGTGCTCAGACGCAGTTCGATTACAAGAATGAACGTTTCATCGTC 141355 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGG 6436 ||||| || |||||||||| ||||||||||| || ||||| Sbjct 141356 AACGGCAGCCACGACTCTGCCAAACTGCAGGACTTGCTGGACGG 141399 >seq1 Length=8004 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4235 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 4176 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 4175 GGTAATATTTAGCCTTA 4159 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 6676 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 6617 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 6616 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 6582 >seq5066 Length=19128 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| || ||||||||||||||| || || | Sbjct 19079 TACCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTG 19020 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || | ||| || || ||||| || | || |||||||| | || Sbjct 19019 ATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGG 18960 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| ||| ||| || ||||||| || |||||| | ||||| Sbjct 18959 GAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAA 18900 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || ||||||||||| || | ||||| ||||| |||||||| Sbjct 18899 CTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Score = 102 bits (112), Expect = 5e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || |||||||| || ||||| || || || | || || | || ||||| ||||| Sbjct 18813 TCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAA 18754 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || | ||||| ||||| | ||| | |||||||||||| ||| || || || || Sbjct 18753 ATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTT 18694 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || ||||| |||||||||||| |||||||| |||||||| | || |||||| Sbjct 18693 TCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACG 18634 Query 38307 AATATCTGCATGTT 38320 || |||||||| || Sbjct 18633 AAAATCTGCATCTT 18620 >seq2668 Length=134947 Score = 107 bits (118), Expect = 1e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 74004 ACTTTTACTGACTGGCCTGCGAGTATGACACAAAAACCTTTGGAGCTTGCTGAGGCGGGA 74063 || |||| || ||||| ||||||| ||||||||| ||| ||||| || || || Sbjct 31137 ACCTTTAAGGATTGGCCCCGCAGTATGAAACAAAAACCCGAGGAACTTGCCGAAGCTGGC 31078 Query 74064 TTTTATTATACGAATAAAGGCGACAGAACAAAGTGCTACTATTGTGACAATGGTTTAAAA 74123 |||| ||||| ||| || || | || ||||| ||||||||| ||| | | Sbjct 31077 TTTTTCTATACCGGTAACGGAGATAAGACGTTGTGCTTTTATTGTGACGGGGGTCTTAGG 31018 Query 74124 GATTGGGAACCCGAAGATGTGCCCTGGGAACAACACGCTCGTTGGTTTGACAAATGTGAA 74183 |||||||| ||| ||||| || ||||| ||||| ||||||||||| || || | Sbjct 31017 GATTGGGAGAACGACGATGTACCGTGGGAGCAACATGCTCGTTGGTTCGATCGCTGCGCC 30958 Query 74184 TTTGTTAAAATTGTAAAAGGCGATCAGTATGTGCAAAAGGTTATATCAGAAGCGTGTGTA 74243 | ||| || | |||||||| | || || ||||| ||||| || ||||| ||||| Sbjct 30957 TATGTACAACTCGTAAAAGGGCGGGATTACGTACAAAAAGTTATTTCGGAAGCTTGTGTC 30898 Query 74244 AT 74245 || Sbjct 30897 AT 30896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334913477201891