Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq538 509 2e-139 seq1957 98.7 1e-15 >seq538 Length=46986 Score = 509 bits (564), Expect = 2e-139 Identities = 1197/1792 (67%), Gaps = 30/1792 (2%) Strand=Plus/Plus Query 61828 TTTTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAG 61887 ||| | |||| ||| || | || |||||||| | | | || ||||| ||||||| Sbjct 41428 TTTAACTTTAGTCTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAA 41487 Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 |||||||||||| ||||| | || | |||| | || ||||| ||| |||| ||| Sbjct 41488 ATAGTACATTCCAGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTT 41547 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 |||| | || || |||| ||| ||||| | || ||||| ||||| || || ||||| Sbjct 41548 TCCATAATTTGGTTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCC 41607 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AA 62066 || ||||||||||||| |||| | || || || ||||||||||| || || || || Sbjct 41608 TCTATCTGCAGCCATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAA 41667 Query 62067 CTCGCTTAATATCTTCTGGAAGGTTT---GTATTCTGAATGGATCCACCATCTGCCATAA 62123 || ||| || | || ||||| ||| |||| || || |||||| | || | Sbjct 41668 GTCCCTT-ATTTTTTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTA 41726 Query 62124 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 || ||| || || || |||| |||||| | | ||||||| || | | |||||| Sbjct 41727 TCAAATTTTTCATATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGAT 41786 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 | ||||| |||||||| || ||||| ||||| | || |||||| || ||| | | Sbjct 41787 GGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATG 41846 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||| | ||| ||||||||||| | || || || || || ||||| ||||| || || | Sbjct 41847 GTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTA 41906 Query 62304 CCAATAAACTATTTCTAAGACCGTATGTTCTG-ATTTTATCTTTTAGAGGTTCCCAATTC 62362 ||| | ||| | |||||| ||| | || | ||| ||||||| | ||||| | Sbjct 41907 ACAAAAGGGAATTACGAAGACC--ATGCTTTGCAATTTTTCTTTTAAGGCAGTCCAATCC 41964 Query 62363 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 62421 || ||||| | || ||||| ||| || | ||| || | | Sbjct 41965 CACAGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGA 42024 Query 62422 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62481 | ||| |||| || ||| ||||||||||| || | ||||||||| || ||||| Sbjct 42025 C-TTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAA 42083 Query 62482 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAG--ATCTTGCGCTTCCAGGCTA 62539 || || || || || ||||| || || | | ||| || | || ||||| || Sbjct 42084 AGCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATT--GCTTCTTCACTC 42141 Query 62540 TCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATA 62599 ||| | ||| | | | | | ||| || ||||||||||| |||||||| || || ||| Sbjct 42142 TCATAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATA 42201 Query 62600 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62659 || |||||| || |||| || | | |||||||| | ||||| | |||| ||| ||| Sbjct 42202 GGCCTATGTTTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATA 42261 Query 62660 ATTTTATTGAGATTTCTGACAATTACTTTGA-CCACATCCTTCAGTTTGAGAAAATCAAA 62718 || ||||| | |||| || | | ||| | || | || | ||| |||||| ||| Sbjct 42262 ATCTTATTTAAATTT-TGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAA 42320 Query 62719 TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 62778 || | |||||||| || | || | || || | ||| || || || || || Sbjct 42321 AGTTTTATTTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTC 42380 Query 62779 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 62838 || || | ||| | | || || |||||||| || || || || || || || | Sbjct 42381 ATCAGGTGATGTATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAG 42440 Query 62839 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 62898 ||||| ||||||||| ||| |||| || | ||| ||||| | || |||| || || || Sbjct 42441 ATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGT 42500 Query 62899 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC----CTTTATTATAGATT 62954 ||||| || | |||||| || |||||||| | || | || || || || | Sbjct 42501 TTCAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACA-- 42558 Query 62955 TGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63014 || | |||||| ||| || | ||| || ||| || || || |||||| || Sbjct 42559 --TAGCGTTTTTCTTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAAT 42616 Query 63015 TGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTC 63074 ||| |||||| || | | |||||||| | ||| | | | | | | || | Sbjct 42617 CAGCCAATCCAGGGCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCC 42676 Query 63075 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCC 63133 |||||||||| | ||| || ||||| | ||| ||| |||| ||||| | || ||| Sbjct 42677 GTTTCATAAACAAATCTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTACTTCT 42735 Query 63134 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63193 || || || ||||||||||| | ||| | || | | | ||| | ||||| |||||| Sbjct 42736 TCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCC 42795 Query 63194 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63253 || || | || | ||||||| |||||||| || || ||||| | ||||| || ||| Sbjct 42796 AAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTG 42855 Query 63254 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATA 63313 |||||||| ||||| ||||| |||| || ||||||||| | ||||| || || | ||| Sbjct 42856 TTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATA 42915 Query 63314 TAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63371 || |||| | || | || | | | | ||| | ||| || || || || || | Sbjct 42916 TAAGTTCCTTTAGCTCTTATGCAATGC-ACATGA-ACACCGATACCTCCAGCTGACTTGG 42973 Query 63372 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 63431 | |||||||| ||| |||||| |||||||| || || || ||||| ||||| |||| Sbjct 42974 AAATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAG 43033 Query 63432 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63491 | || ||||| ||||| ||| | | ||| | ||| ||| | || || Sbjct 43034 CTACAAGGAAACAAGAAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGC 43093 Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63551 || |||||||| |||||||||| | | |||||| || | ||||||| ||||||| Sbjct 43094 TTGCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATAT 43153 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 | || || || || || |||||||| | ||| ||||| |||| ||| Sbjct 43154 CTTCCCCGTGTATGCCAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||||||||||||||||||||| || ||| |||| | ||| || || |||||||| ||||| Sbjct 43749 CTTGTTGTTTATTTTCAACAAATATGATCTTTCTAGAGTCTTGAATCCAAAATAATTGTA 43808 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 63726 | ||| || || || |||| ||| | |||| |||| | || |||| ||| |||| Sbjct 43809 TTTAAAATCACGATCATAAACAATCGCAGAGTCGAGTCTGTCTTTATGTTTCATAAC 43865 >seq1957 Length=467265 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/201 (72%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | ||| ||||| || || | ||| || ||||| ||||| || ||||| |||| Sbjct 419604 AAAGTCAATCCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCA 419545 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || ||||| || ||||| ||||| ||||| || | || | || || || | || | Sbjct 419544 GAGAAGAATATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAA--GTTGCAG 419487 Query 32832 TCATGTATCCACTT--TTG---AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || || | || | ||| |||||| || |||||||| |||||||| || | ||||| Sbjct 419486 TCTTGCTTGCAATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTACACAGGGTAATGTCT 419427 Query 32887 CTATAGCATTAAAGAGATAGT 32907 | ||||||||||| | | ||| Sbjct 419426 CAATAGCATTAAACAAAAAGT 419406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633566569575600