Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq566 279 4e-70 seq5066 111 1e-19 >seq566 Length=99533 Score = 279 bits (308), Expect = 4e-70 Identities = 781/1184 (66%), Gaps = 21/1184 (2%) Strand=Plus/Minus Query 56986 TTAAGTAGGTCGCCGTTGTCGGCATCTATCTCCCATGCAAACAAACCACCAAGTTTCGAA 57045 || ||||| || ||||| || || ||||| ||||| || || | ||| || ||||| | Sbjct 71446 TTGAGTAGATCTCCGTTATCAGCGTCTATTTCCCAGGCGAATAGACCGCCGAGTTTATTA 71387 Query 57046 TTTACCACATACTTTGCTTTGTCCGTCACGGAATCTA-CACTGTCATAACTAATCAAATC 57104 ||| ||| || || |||| || | ||||| |||| | |||| ||| | | | || Sbjct 71386 TTTCTCACGTATTTGCCTTTTTCGATGACGGA-TCTAGCGTTGTCGTAAGTTACAAGGTC 71328 Query 57105 CTGTGTTT-CGGCATCGAAAACGCTTGCTGCCTTGGCCACGCTGTCGTATGAGTATGTGT 57163 | || ||| | ||| ||| || ||| | || ||| | ||||| | || Sbjct 71327 CCCAGTGGACGGTCT-GAACACGTATGGTGCTTGTGCTACGTTATCGTAATGGAATTCCC 71269 Query 57164 ATCGACCTCGGTTTATTTCGCTTGCAATTTGCTTGTAATCAACCACGCCTTCCTCCCACG 57223 || || || |||||| | || |||| ||||||| || || || || | ||| | Sbjct 71268 ATTTTCCCTGGGCAATTTCGTTCGCTATTTCTCTGTAATCGACTACACCGTCTTGCCAGG 71209 Query 57224 TGCCGTGCACAGGCCCACTTCCTTTACCCGTGAACGGATTGTTGTCCGTGTAGTCGTGCA 57283 | || | || || || || | || || ||||| |||||||||||| ||| |||| | Sbjct 71208 TTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAGGGATTGTTGTCCTCGTACCCGTGGA 71149 Query 57284 CACCCGTCCATCCTCGACCGTACATGGCCACGCCAACCACTATTTTGTCAGCGGACACGT 57343 | || ||||| || || |||||||| ||||| || || | || || | | | ||| Sbjct 71148 CGCCAGTCCAGCCACGTCCGTACATTGCCACTCCGACGATGATCTTCTTCGGGTTCACAC 71089 Query 57344 TCTGCGCTAACAAAGTGCGTACAGCATTGTCTGTGGTATATGGTTCGCTAGGGTTCCA-- 57401 || |||||||| |||| || || || ||||| | ||| |||| ||||| Sbjct 71088 CTTGAGCTAACAAGTATTTTACACCAAAATCGGTAGTATAAGTTTCTTTAGGATTCCATT 71029 Query 57402 CAGAGGCGCATAAATGTTGGTTTGATAGCCCAAATTTGTGTTACTCCAGGCACCTTTAAA 57461 | | ||| ||||| || || || | |||| | | |||| ||| || || || || Sbjct 71028 CTGGAGCGTATAAAGGT--GTCTGGTGCCCCAGAGTGTCGTTAGACCAAGCTCCCTTGAA 70971 Query 57462 ATCGTACGACATTAAGAATATGCTGTCGAGATATTTTTGCGCATGATTGTAATCGACAAG 57521 || || ||| | ||| ||| ||| | || ||||| || | |||| || || | Sbjct 70970 GTCATAACTCATCAGGAAAATGTGGTCCATGTAGTTTTGGGCTTTGCTGTAGTCAACTAC 70911 Query 57522 TTCGATTTTATCATTACCGGCGCCGATGGCTGTTGTGAGCAATAGT--TTACGATCAGTT 57579 | |||||| || ||| |||| ||| |||| ||| | | | || || | | ||||| Sbjct 70910 CTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTCA--ATTCGTATTTCCTACCAGTT 70853 Query 57580 TCCAGTTCCAAC--TCGTCCAACATTAATCTCAAATCTTTCAATAGCCGCACGTATGTTT 57637 ||| || ||||| | |||| | | || |||| || ||||| | Sbjct 70852 G--AGTGAGAAAGTTCGTCAAGCATTTCACGGAGTTCCTTCATGAGGTTGACGTAAACAT 70795 Query 57638 CTCCGTCGCGACCAGGGTCGCCCAACAAAGGATTAGCACCATTACCACCAGGAAATTCCC 57697 | ||||| | ||| || || ||| ||||| || ||||||||||| || |||| Sbjct 70794 CACCGTCTT---CTGGGCTTCCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCC 70738 Query 57698 AATCAATGTCGACTCCATCAAAAAATTTCCACACTTTGATGTAGTCGCGCACCGATTGCA 57757 |||||||||| || ||||| ||||||||||| || | | | || || || | | Sbjct 70737 AATCAATGTCAACACCATCGAAAAATTTCCAGGTTTGAAGGAACTCTTTGACTGAGTCAA 70678 Query 57758 CAAAA-GTGTTGCGAATAGTGTCGTCGTGCATGAAAAAGAAGGGATCCGATAAGGTCCAA 57816 | || | ||| | | || | ||| | || ||||| ||||| | || ||||| Sbjct 70677 CGAAGCGAGTT-CTCTTGGTCTTGTCAGTAAAAAAGAAGAACGGATCAGCCAATGTCCAT 70619 Query 57817 CCACCAATGGATGGCAATACTTTTAGATGCGGATATGCTTTTTTGACCGCCATCAGTTGA 57876 || ||||| || || | | || || | || |||| ||| | | |||||||||| Sbjct 70618 CCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGA 70559 Query 57877 CCAAAATTACCTTTGTAAGGTTCGTTCCAAGCCGATACTCCTTGTTGAGGCTTTTGTAGC 57936 || || || |||||||| ||||| ||||||| |||| |||| ||||| || |||| Sbjct 70558 CCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAG 70499 Query 57937 GCCGCCCAAGGATCGTGTATCGTTACTTTGAAATCTTCTCGGCCTGCACACGAACGTTGC 57996 || ||||| |||||||| || | |||||| || || || || || || |||||||| Sbjct 70498 GCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGA 70439 Query 57997 AACGCTTCAAAACTACCTGTAATCGTCTTTAGACTGTCGTTGATGCCATCGCCTCCGCAA 58056 | |||| ||||| ||| || ||||| ||||||||| |||||||| || || ||| Sbjct 70438 AGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTGTCGTTAATGCCATCTCCACCACAA 70379 Query 58057 ATAGGCACGAAACCGTACAACAAATGAGTCAAATTGGGTACGGGTACTTTATCAACTGGA 58116 || || | ||||| |||| | ||||| | |||||| | ||||| ||| || || Sbjct 70378 ATTGGAATAAAACCATACAGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACGGGG 70319 Query 58117 TATTTACGACCGTACACACTCCACTCCACGAAATAAGCTCCCAC 58160 | || | ||| || | ||| ||||| |||||||| || || Sbjct 70318 AACTTCCTCGGGTAAACGCCCCATTCCACAAAATAAGCGCCAAC 70275 >seq5066 Length=19128 Score = 111 bits (122), Expect = 1e-19 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||| | || |||||| | || || ||||||| || | || Sbjct 18850 AATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTC 18909 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||||||| | || ||||||| | ||| ||||||||||| ||||| || || Sbjct 18910 GGATACTATCGAG--AATGTCAAAGCAAAGATTCAA-GACAAAGAAGGCATTCCCCCAGA 18966 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| ||||| ||| | ||||| | ||| || | || || Sbjct 18967 TCAACAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCAGACTA 19026 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| || || || || || || || || Sbjct 19027 TAATATTCAAAAGGAGTCTACACTTCACTTGGTACT 19062 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || ||||| | || || | ||||| || | || Sbjct 18623 ATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTACTTTAGAAGTTGAACCATCC 18682 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | | |||| || | ||| ||||||||||| ||||| || || || Sbjct 18683 GATACCATCGAAAACGTTAAAGCGAAGATTCAA-GACAAAGAAGGCATTCCCCCAGATCA 18741 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| || || || | ||||||| ||| || | |||||| || Sbjct 18742 GCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGAACCTTATCCGATTATAA 18801 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||||||| || ||||| | || || |||| | || |||| Sbjct 18802 CATTCAAAAAGAATCTACCTTACATCTGGTTCTCCGGCTTCGTGGTGGAA 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433284372130715