Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq566 293 3e-74 >seq566 Length=99533 Score = 293 bits (324), Expect = 3e-74 Identities = 794/1203 (66%), Gaps = 29/1203 (2%) Strand=Plus/Minus Query 51249 CCCAGGCCCTCGTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCCACGCA 51308 || || ||| || ||| ||||| ||||| || ||||| |||||||| |||||||| || Sbjct 71467 CCTAGCCCCATGTTCATTGCGTTGAGTAGATCTCCGTTATCAGCGTCTATTTCCCAGGCG 71408 Query 51309 AACAATCCCGCCAACCCGTTCGCAAG----CACGTACTGGCCCTTGGCGCGAACGGATCG 51364 || | || ||| | ||| | |||||| | ||| || || ||||||| Sbjct 71407 AATAGACC-GCCGA---GTTTATTATTTCTCACGTATTTGCCTTTTTCGATGACGGATCT 71352 Query 51365 AGCGTTGTCGAACGTGATCAGGTTGCCCGCGATCGGTTCGAAGCCGTACGCAGCCTCGGC 51424 |||||||||| | || | |||| || | | |||| ||| |||| | || | || Sbjct 71351 AGCGTTGTCGTAAGTTACAAGGTCCCCAGTGGACGGTCTGAACACGTATGGTGCTTGTGC 71292 Query 51425 GATCAGATCGTAGTAGAACTCGTAGTCT---TTGACGAACTCGTTCGCGATCTGCCGATA 51481 | |||||| | ||| || | | | | | | | |||||||| || | | || Sbjct 71291 TACGTTATCGTAATGGAATTCCCATTTTCCCTGGGCAATTTCGTTCGCTATTTCTCTGTA 71232 Query 51482 GTCGACCACCCCATTTTCCCAGGTGCCTTCGATGGGTCCGCCGGCGACGCCGCTGAACCA 51541 ||||| || || | || |||||| || | || ||||| ||| ||| |||| Sbjct 71231 ATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCAGTGAAGGG 71172 Query 51542 GTTCGGTTCGTAGTCGTAGCCGGTCACGTTCGACCAGCCGCGAGCGTACATCGCCACGCC 51601 || ||| || ||||| ||| ||| | |||||| || ||||||| ||||| || Sbjct 71171 ATT--GTT-GTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTACATTGCCACTCC 71115 Query 51602 GACGACGATCTTCTGATTGCGCACGCCCTGTTCGAGAAGCGACGACACGGCATAGTCGGT 51661 ||||| |||||||| | ||| || || | | | | || || | ||||| Sbjct 71114 GACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTACACCAAAATCGGT 71055 Query 51662 GGTGTACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCAGATC 51721 || || |||| | || ||||||| || ||| | | | ||||||| |||||| Sbjct 71054 AGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCCAGAGT 70995 Query 51722 GGTGTTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTGCGT 51781 | ||| ||||| || |||||||| || || |||| |||||||||| |||| | | Sbjct 70994 GTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATGTAGTT 70935 Query 51782 CTGCGCCCGAGCGTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCTGGT 51841 || || |||||| || || || ||||| || | || |||||||| || || Sbjct 70934 TTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGT 70875 Query 51842 CAACAGGTA----CGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGCT 51897 ||| ||| | | | ||| | | | ||||| ||||| || || || | Sbjct 70874 CAATTCGTATTTCCTACCAGTTGAGTGAGAAAGT----TCGTCAAGCATTTCACGGAGTT 70819 Query 51898 CGGTCAAAAGCGTCACGTACGTCGCACCATCGCGATC-GGGATCGCCCAGGTCGGGATTG 51956 | ||| || | ||||| |||| || || ||| | | |||| ||| || Sbjct 70818 CCTTCATGAGGTTGACGTAAACATCACCGTCT---TCTGGGCTTCCAAAGGTAGGG-TTA 70763 Query 51957 GCGCCTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGTC 52016 |||||||| || || || |||||||| || | ||| || || ||||| || ||||| || Sbjct 70762 GCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGTT 70703 Query 52017 AGCAGAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTCGCGTCGTGCAGGAAG 52076 | || ||||| || || || |||||| | | ||| || ||| | ||| Sbjct 70702 TGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTCTTGTCAGTAAAAAAG 70643 Query 52077 AAGAACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGATTG 52136 ||||||||||| | || ||||| || || || || || |||||||| || ||| | Sbjct 70642 AAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTC 70583 Query 52137 GCCCGTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCCGAG 52196 || |||| | |||||| || || ||||| || ||||| || || ||||| | || Sbjct 70582 GCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGAT 70523 Query 52197 ACGCCTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAGTCC 52256 | |||||||| |||||||| | || ||||||||||||||||| | || ||||||||| Sbjct 70522 AGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCC 70463 Query 52257 GACCTGCCCAC-GCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTTCAGGCT 52315 | | |||| ||| || ||||| | |||| |||||| ||||| || | || Sbjct 70462 TCGC-GACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACT 70404 Query 52316 GTCGTTGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGACAGGTT 52375 |||||| ||||| || || || || || ||||| || || ||||| || || | || || Sbjct 70403 GTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAGATT 70344 Query 52376 CGGCAACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGACAAAGTA 52435 || | || || |||| ||||| || || | | ||||||||||||||| ||||| || Sbjct 70343 GGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAATA 70284 Query 52436 GGC 52438 || Sbjct 70283 AGC 70281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537547685749560