Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1957 172 6e-38 seq2304 136 4e-27 seq1060 134 2e-26 seq1226 132 5e-26 seq385 131 2e-25 seq1646 129 7e-25 seq1122 127 2e-24 >seq1957 Length=467265 Score = 172 bits (190), Expect = 6e-38 Identities = 149/185 (81%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| ||||| ||||||| ||| ||||| || || || ||||| ||||| ||||| || Sbjct 419072 ATGTAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGA 419013 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| |||||||| || | |||||||||||| ||||| | || || || Sbjct 419012 AAGCCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGG 418953 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||||||||| ||||| ||||| ||||| || || |||| |||||| || |||||| Sbjct 418952 TTCTCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGT 418893 Query 93542 TTCTC 93546 || || Sbjct 418892 TTTTC 418888 Score = 161 bits (178), Expect = 1e-34 Identities = 171/224 (76%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 93110 AAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGT 93169 |||||| | || | ||| |||| |||||||||||| || || ||||| | ||||| | Sbjct 419636 AAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTC 419578 Query 93170 TTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCA 93229 ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || || ||| Sbjct 419577 TTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCA 419518 Query 93230 AATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAA 93289 || || ||||||||||| | ||| |||| | || || ||||||| | |||||| Sbjct 419517 AAAGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAG 419458 Query 93290 TCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 || || || ||||| | ||| |||| ||| || ||||| ||||| Sbjct 419457 TCAGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAA 419414 Score = 140 bits (154), Expect = 4e-28 Identities = 148/194 (76%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 93110 AAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGT 93169 |||||| | || | ||| |||| |||||||||||| || || ||||| | ||||| | Sbjct 418610 AAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTC 418668 Query 93170 TTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCA 93229 ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || || ||| Sbjct 418669 TTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCA 418728 Query 93230 AATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAA 93289 || || ||||||||||| | ||| |||| | || || ||||||| | |||||| Sbjct 418729 AAAGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAG 418788 Query 93290 TCGGCTTTTTTCTT 93303 || || || ||||| Sbjct 418789 TCAGCCTTCTTCTT 418802 Score = 123 bits (136), Expect = 3e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 92896 CTTTTCACCGATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 ||||||||| || ||||| | | ||||||||||||||| || ||||| | |||||| Sbjct 421528 CTTTTCACCTATTAACTCAAGAAGCAGTCTATCAGCTACAAACTCGATGTAGTCAGACAT 421469 Query 92956 CAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTC 93015 | ||||| ||||| || ||||| | ||||| ||||| ||||||||||| || | || Sbjct 421468 GAGCTCACAGTTCATGCCAAGAAGCCTGACAGGAAGAGCATCGGTCAAGAACTCCTGTTC 421409 Query 93016 GATTACAACGGC-TTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGA 93074 || || || || |||||| | ||| |||| ||| || |||| || || ||||| | Sbjct 421408 AATAACTACTGCGTTCTTT-ATGATCTCTAGTACACTTTCGTTTGACGGCTTCTGTACTA 421350 Query 93075 CATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 || || |||| | || |||||||| || |||| ||| Sbjct 421349 GATGCTTAAACATCAGACATGCAAAGTCTGTGTGTAGACC 421310 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || ||||| |||||||| ||||||||||| || || ||||||||||||||||| | | Sbjct 418459 TTAGATAGATCAACTTCTTCAACAGTCCAAAAGGAGGCCTCTGCTTTTTTGTACATTTGC 418400 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 ||||| || | || || || || ||||| ||||| || ||||| ||| | || | Sbjct 418399 CATATATCAGGGTACTGGATGGGGAATATAACAAAGCGGCGGGGGTTTTCTCTCAGCAGG 418340 Query 93701 GGCTCTAGTTGTGGGTCAAA 93720 || || |||||||||||||| Sbjct 418339 GGTTCAAGTTGTGGGTCAAA 418320 >seq2304 Length=140456 Score = 136 bits (150), Expect = 4e-27 Identities = 84/89 (94%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 136045 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 135986 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||||||||||||||||||||||| Sbjct 135985 GTGGGTTCGAACCCCACACCTGACAAATT 135957 >seq1060 Length=161888 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 3306 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 3365 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 3366 GTGGGTTCGAACCCCACACCTGACAAAT 3393 Score = 132 bits (146), Expect = 5e-26 Identities = 85/92 (92%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 6635 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 6694 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||||||||||| |||| Sbjct 6695 GTGGGTTCGAACCCCACACCTGACAATATATT 6726 >seq1226 Length=92859 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 34578 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 34637 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||| Sbjct 34638 TGGGTTCGAACCCCACACCTGACAAAT 34664 >seq385 Length=226785 Score = 131 bits (144), Expect = 2e-25 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 144321 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 144262 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 144261 GTGGGTTCGAACCCCACACCTGACAA 144236 >seq1646 Length=338584 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 307218 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 307277 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 307278 GTGGGTTCGAACCCCACACCTGACA 307302 >seq1122 Length=95185 Score = 127 bits (140), Expect = 2e-24 Identities = 83/89 (93%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGA-TTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| Sbjct 35510 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTTAAGCTCTGGTTCCCGAGAGGGAG 35569 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||||||| Sbjct 35570 CGTGGGTTCGAACCCCACACCTGACAAAT 35598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556803297161640