Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq566 322 4e-83 seq538 253 2e-62 seq5066 149 5e-31 >seq566 Length=99533 Score = 322 bits (356), Expect = 4e-83 Identities = 809/1218 (66%), Gaps = 35/1218 (3%) Strand=Plus/Minus Query 48510 TTGCCAAGGCCAATGTGCATAGCATTCAACAAATCGCCATTGTCAGCGTCGATTTCCCAT 48569 || || || || |||| ||| || || | | ||| || || |||||||| |||||||| Sbjct 71470 TTCCCTAGCCCCATGTTCATTGCGTTGAGTAGATCTCCGTTATCAGCGTCTATTTCCCAG 71411 Query 48570 GCAAAGAGGCCTCCTAAATTGTTGTCTAGCACGTATTGACCTTTGTCCATAACAGATTGT 48629 || || || || || | || || | | |||||||| ||||| || || || ||| Sbjct 71410 GCGAATAGACCGCCGAGTTTATTATTTCTCACGTATTTGCCTTTTTCGATGACGGATCTA 71351 Query 48630 ACACTATCGTAACTGATGAGATCACCACTGTCCGCTTTGGTCACGTACGCTGCTTTAGC- 48688 | | |||||| | | || || ||| || || | || |||||| | ||||| || Sbjct 71350 GCGTTGTCGTAAGTTACAAGGTCCCCAGTGGACGGTCTGAACACGTATGGTGCTTGTGCT 71291 Query 48689 --GGTGTCGTCATA-----CCTATATTT-----GTA--TTCGTTAATACGCGATTGAATG 48734 | | |||| || || || || | | |||||| ||| ||| Sbjct 71290 ACGTTATCGTAATGGAATTCCCATTTTCCCTGGGCAATTTCGTT----CGCTATT----- 71240 Query 48735 TGCCTATAGTCGACGACACCGTCCTCCCACGTCCCGGTAACGGGGCCGACGGCCACACCG 48794 | || || ||||| |||||||| | ||| || || | || || || || || Sbjct 71239 TCTCTGTAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTGCCA 71180 Query 48795 CTAAAGGGGTTATCGTCGCTGTAATCGAGGACACCGGTCCATCCGCGACCGTACATTGCC 48854 | ||||| || | ||| ||| || |||| || ||||| || || |||||||||||| Sbjct 71179 GTGAAGGGATTGTTGTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTACATTGCC 71120 Query 48855 ACACCCAATACAATTTTGTTGGGTCTCACGCGTTGGTCCAAAAGAGCATTC-ACCGCAAA 48913 || || | | || || || || |||| | ||| | || | || ||| || |||| Sbjct 71119 ACTCCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACA-AGTATTTTACACCAAA 71061 Query 48914 ATCCGTAGTGTAATGTTCGTTTACATTCCATTTCGGAGCATACAATGCCGTCTGGTGACC 48973 ||| ||||| ||| ||| || |||||||| ||||| || || | |||||||| || Sbjct 71060 ATCGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCC 71001 Query 48974 CAAATCAACATTCGACCAGGCACCCTTAAAATCGTAGTTCATTAAAAATATTTTATCTAA 49033 || | | || ||||| || ||||| || || || |||| | || || | || | Sbjct 71000 CAGAGTGTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCAT 70941 Query 49034 ATAATTTTGGGCATCGTTGTATTTAACCACGGCAATTTTGTCGTCGCCTGCGCTAATGGC 49093 || |||||||| | | |||| | ||| || |||||||| || ||||| || || Sbjct 70940 GTAGTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGC 70881 Query 49094 GCTTGTTAATTCAAAATTACGGCCGGTTTCGCGTTCAAGATCGTCGAGCATTTCGCGTAA 49153 ||| ||||| | || | || ||| | | ||| ||||| |||||||| || | Sbjct 70880 TGATGTCAATTCGTATTTCCTACCAGTTGAGTGAGAAAGTTCGTCAAGCATTTCACGGAG 70821 Query 49154 TTCTTTCAAGAGAACAACATAAGTGTGTCCGTCGTGTTGCGAATCGCCCAACAACGGATT 49213 ||| |||| ||| || ||| | ||||| | | | | || | || || || Sbjct 70820 TTCCTTCATGAGGTTGACGTAAACATCACCGTCTTCTGG-GCTTC--CAAAGGTAGGGTT 70764 Query 49214 CGCCCCTTTGCCGCCCGGAAATTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCAAGT 49273 || ||||| || || || || |||||||| ||||| || || |||||||||||||| || Sbjct 70763 AGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGT 70704 Query 49274 TAACAAAAATTCGCGCACCGAATCTACAAA-CACGTCACGTTTATGCGCATCGTGCATAA 49332 | | || || || || || || || | || || | | || | || Sbjct 70703 TTGAAGGAACTCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGT-CTTGTCAGTAAAAA 70645 Query 49333 AGTAAAATGGATCGGACAACGTCCAACCCCCGATGGATGGCAATACTTTTAAATTGGGAT 49392 || | || ||||| | ||| ||||| || || || || || | | || | | || Sbjct 70644 AGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTC 70585 Query 49393 TTGCTTTTTTAATTGCCATCAATTGACCGAAATTGCCTTTGTACGGTTCGTTCCAAGCGG 49452 | |||| ||| | || ||||| ||||||||| ||||||||||| ||||| ||||||| | Sbjct 70584 TCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATG 70525 Query 49453 ACACACCTTTTTGGGGTTTTTGCAGCGCAGCCCACGGATCGTGAATAGACACTTTGAAAT 49512 | | |||||| || ||||| || | || ||||| |||||||||||||| ||||| || | Sbjct 70524 ATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGT 70465 Query 49513 CGTCCCGGCCAGCGCAACTTTTTTGTAATGCCTCAAAACTGCC--CGTTATCGTTTTCAA 49570 | || || ||| |||| ||| | ||| | ||||| || || | || ||| || Sbjct 70464 CCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTT--AA 70407 Query 49571 ACTGTCGTTAATGCCGTCGCCCCCGCAAATTGGCACGAAACCGTACAGCAGATGCGATAG 49630 ||||||||||||||| || || || |||||||| | ||||| ||||| || || | ||| Sbjct 70406 ACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAG 70347 Query 49631 ATTTGGTGCGGGTACGCGATCGGCGGGAAACGATCGACCGTACACACCCCACTCGACAAA 49690 ||| || |||||||||||| |||| ||| | ||| || ||||| || ||||| Sbjct 70346 ATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAA 70287 Query 49691 GTACGCAGCGACAACTTT 49708 || || | || ||||| Sbjct 70286 ATAAGCGCCAACTACTTT 70269 >seq538 Length=46986 Score = 253 bits (280), Expect = 2e-62 Identities = 1106/1722 (64%), Gaps = 52/1722 (3%) Strand=Plus/Plus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 ||| || || ||||||| |||||| | || || || || || || ||||||||||| || Sbjct 41440 CTTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCC 41499 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 |||||||| || | ||||||| | | || || | || || | | || | || Sbjct 41500 AGTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGG 41559 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 || | | | |||||||||||| ||||| ||||||||||| | || | ||| ||||| Sbjct 41560 TTCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGC 41619 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| || |||||||| |||||||| || || ||||| | || || | | Sbjct 41620 CATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTT 41679 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 |||||| || | |||||| || || | || ||||| ||| || ||| ||| Sbjct 41680 TTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTTCAT 41739 Query 129078 CTGTTCGTTGTACAAATTCAG-TTTGATCAAATCGTCGGTCAAG---TATTTGTTTATTA 129133 | ||| | | || |||| || | | ||| || || ||| | | ||| | | Sbjct 41740 ATCTTCATCCCA-TAAGTCAGCTTGGGTTAAA---TCTGTTAAGAGATGATGGTTAACAA 41795 Query 129134 CTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACG 129193 ||||||| ||||| | || || || || ||||||||| || || || ||||| | Sbjct 41796 CTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAG 41855 Query 129194 ATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCG 129253 ||||||| || || | ||| || || || | || || ||||| ||| | |||| | Sbjct 41856 ATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGG 41915 Query 129254 AGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT- 129312 | || || | ||| |||| | ||| | || |||||| ||||| ||||||| ||| Sbjct 41916 AATTACGAAGACCATGCTTTGCAAT-TTTTCTTTTAAGGCAGTCCAATCCCACA--GATC 41972 Query 129313 -GTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAA 129371 || || || | | ||||| ||| ||||| || || || ||| || ||||| | Sbjct 41973 AGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATC 42032 Query 129372 GTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAA 129431 || | || || || | | ||||||||| ||||| ||||| || || ||| | Sbjct 42033 ATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATA 42092 Query 129432 ATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGC 129489 || || ||||| ||| |||| || || | | | || | || || || || || Sbjct 42093 GTATATAGTTTC--AAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGA 42150 Query 129490 ATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGT 129549 | | || | |||||| || || || || |||| ||| | || || || | |||| Sbjct 42151 AATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGT 42210 Query 129550 TTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTT 129609 || |||| || || | ||| || |||||| |||| | || ||||| || ||| Sbjct 42211 TTCATATTCGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTT 42270 Query 129610 AAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACA 129669 ||||| | ||| |||| || || | |||||| ||| |||||| | | | Sbjct 42271 AAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAA---AGTTTTA 42327 Query 129670 TCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGAC-GGCACTT--TC- 129725 | | || ||||| ||| ||| || || || |||||||| || | ||||| || Sbjct 42328 T---TTTCAACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCA 42384 Query 129726 GTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAA 129785 | | || | ||||| |||||||| | ||| | || || ||| || ||||| | Sbjct 42385 GGTGATG----TATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAG 42440 Query 129786 ATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGT 129845 || |||||||||||||| ||||||||| |||||| |||| ||| || || || || || Sbjct 42441 ATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGT 42500 Query 129846 TTCGACTTGCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAA 129905 ||| ||||| | ||| | || | | |||| | | || | ||| ||||| | Sbjct 42501 TTCAACTTGTGCTTCTATTATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACATA 42560 Query 129906 ---TTTGCCACATTTCTCGTA--TGCCACATACAGTTGTTCAAATTC-TGAGCCGTGTAC 129959 ||| | || || || | || ||| || ||||||||| | | || | Sbjct 42561 GCGTTTTTC---TTGTTCATACTTTTCATATAAAG--CTTCAAATTCTTCACCCCAACAA 42615 Query 129960 GGTGTCGAGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGAC 130019 | | | | | ||| | | | |||||||| | |||||| || ||| ||| || Sbjct 42616 TCAGCCAATCCAGGGC-AGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTAC 42674 Query 130020 TCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATC 130079 ||||||||||||||||| |||| ||| | || || || || |||| ||| | || Sbjct 42675 CCGTTTCATAAACAAATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTC 42734 Query 130080 CTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTC 130139 || ||| | || ||| | || | || || | | || |||||||| ||||| Sbjct 42735 TTCTTTACCAGTATTCTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTC 42794 Query 130140 AACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGC 130196 | ||| | ||| | ||| || |||||| |||||||| || || | | | | Sbjct 42795 CAAATACACTGCAAATGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGT 42854 Query 130197 ATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAAT 130256 || || ||||||| ||||| | | | || |||| | || ||||| | |||| Sbjct 42855 GTTATTATAGACTCTTAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAAT 42914 Query 130257 GAAACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGA 130316 || | || ||| | | | ||| || | ||| || || || | | || || Sbjct 42915 ATAAGTTCCTTTAGCTCTTATGCAATGCACATGAACACCGATACCTCCAGCTGACTTGGA 42974 Query 130317 TATCAACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTT 130376 || || || || | ||| || ||||| || || |||||||||| ||||| || Sbjct 42975 AATTAATGCACATTGTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGC 43034 Query 130377 TAGGAGGAAACACGAGGCCAATTGGGCGTAACAT-GATCCGCTG--GCAAACAAAGTTGG 130433 || |||||||| || | |||||| | || | | || ||| | | ||||| ||||| Sbjct 43035 TACAAGGAAACAAGAAGACAATTGAG-GT--CTTGGAGTCGCAGCAGAAAACATTGTTGG 43091 Query 130434 ACTTGCATGTGTATACATTTTGTGTGCCATCAAATTGTACGT 130475 |||||||| ||| | ||| | | | ||||||||| || Sbjct 43092 GCTTGCATGAGTAAAATATTTTTCAGATAACAAATTGTAAGT 43133 >seq5066 Length=19128 Score = 149 bits (164), Expect = 5e-31 Identities = 171/229 (75%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 22201 TTTTAT-ACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCAC 22259 |||||| ||| || | |||||||| ||||| || || ||| | || ||||| || | || Sbjct 18604 TTTTATTACAGTTTTCAAGATGCAGATTTTCGTGAAGACTCTCACGGGTAAGACTATTAC 18663 Query 22260 TCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGA 22319 | | ||||| ||| | |||||||| | || | | ||| || ||||||||||| || Sbjct 18664 TTTAGAAGTTGAACCATCCGATACCATCGAAAACGTTAAAGCGAAGATTCAAGACAAAGA 18723 Query 22320 GGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCG 22379 || ||||| || ||||| |||||| | || ||||| || || ||| | || ||| || Sbjct 18724 AGGCATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCG 18783 Query 22380 CACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||| | |||||||| ||||||||||||||||| ||| ||||| | ||| Sbjct 18784 AACCTTATCCGATTATAACATTCAAAAAGAATCTACCTTACATCTGGTT 18832 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||||||| | || |||||||| | || || ||||| ||| | | Sbjct 18851 ATGCAGATTTTCGTTAAAACTCTTACAGGTAAAACTATAACGCTCGAAGTTGAACCTTCG 18910 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||| ||||||||||| || || ||||| || |||||| Sbjct 18911 GATACTATCGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATTCCCCCAGATCAA 18970 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| ||||| || | || || || || | || || || || Sbjct 18971 CAGCGTTTGATCTTTGCTGGCAAGCAACTTGAAGACGGTCGTACACTATCAGACTATAAT 19030 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 19031 ATTCAAAAGGAGTCTAC 19047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419685741391465