Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5066 170 4e-37 seq1291 100 5e-16 >seq5066 Length=19128 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | |||| |||| || || |||||||| ||||||||||||| Sbjct 18851 TTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGG 18792 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | |||||||| | |||||| || || || || | | ||| || || || | Sbjct 18791 ATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGG 18732 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||||||||| |||||||||||||| || || ||| |||||||| || | || ||| | Sbjct 18731 GAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAA 18672 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || || || |||||||| ||||| ||||| |||||||| Sbjct 18671 CTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||||||| || || ||||| ||||| || ||||| || || Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGAT 19018 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | || ||||| | ||||| || || || || | | ||||| || || ||| Sbjct 19017 AGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGA 18958 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| ||||||||||||||||| ||||| |||||| || || | | ||| ||| Sbjct 18957 ATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACT 18898 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || ||||| || || || || || ||||| ||||||||| Sbjct 18897 TCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 >seq1291 Length=99781 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || |||||||| || || || || ||||||||||| || ||||| || |||||| Sbjct 93340 CTCTGCTGGTCGGGAGGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCGATG 93281 Query 68397 GTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 || || | | || || || | |||||||| || |||||||||||||||||||| ||| Sbjct 93280 GTATCAGACGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATC 93221 Query 68457 TGCAT 68461 ||||| Sbjct 93220 TGCAT 93216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921527230966920