Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq566 230 2e-55 >seq566 Length=99533 Score = 230 bits (254), Expect = 2e-55 Identities = 787/1203 (65%), Gaps = 43/1203 (4%) Strand=Plus/Minus Query 83551 TGTTCATCGCGTTGAGCAAATCGCCGTTGTCGGCATCGATCTCCCAAGCAAACAGGCCGC 83610 ||||||| |||||||| | ||| ||||| || || || || ||||| || || || |||| Sbjct 71457 TGTTCATTGCGTTGAGTAGATCTCCGTTATCAGCGTCTATTTCCCAGGCGAATAGACCGC 71398 Query 83611 CTAGTTTGTT-TCGATCGACATATTTAACCTTTCCTAAAACAGAATCGA-CGCTGTCGTA 83668 | ||||| || | || || ||||| | ||| | | || || || | || ||||||| Sbjct 71397 CGAGTTTATTATTTCTC-ACGTATTTGCCTTTTTCGATGACGGA-TCTAGCGTTGTCGTA 71340 Query 83669 CGAAATTAAATCGCCTTTGTTTTTATTGAAAACGTATGACGCTTGAGCTGCGCTGTC--A 83726 | | | || || || |||| ||||||| ||||| ||| || | || | Sbjct 71339 AGTTACAAGGTCCCCAGTGGACGGTCTGAACACGTATGGTGCTTGTGCTACGTTATCGTA 71280 Query 83727 AACGTATACACATAATTGTTGAG----TTCGTTTTGAATTTGACGATAATCTACAACGCC 83782 | | || | ||| | || | |||||| |||| | ||||| || || || Sbjct 71279 ATGGAATTCCCATTTTCCCTGGGCAATTTCGTTCGCTATTTCTCTGTAATCGACTACACC 71220 Query 83783 ATCCTCCCACGTGCCCGGTATTGGCCC-GTTGCCAGTT-CCGGTAAA---ATAGTTATCA 83837 || | ||| || ||| | ||| || ||||| ||| || || || || ||| || Sbjct 71219 GTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGC--GTTGCCAGTGAAGGGATTGTTGTCC 71162 Query 83838 TTCGTATAATTTGTTAGGCCGGTCCAACCGCGGCCGTACATGGCAACGCCAATAATTATT 83897 | |||| | | | ||| ||||| || || |||||||| || || || | || || Sbjct 71161 T-CGTACCCGTGG--ACGCCAGTCCAGCCACGTCCGTACATTGCCACTCCGACGATGATC 71105 Query 83898 TTGTTGGGATCAACACCCTGTT-TAAGTAGCACACTGACAGCGTGATGTGTGGTGTATAA 83956 || || || | ||||| || ||| || | | ||| | || || || || Sbjct 71104 TTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTT-ACACCAAAATCGGTAGTATAAGT 71046 Query 83957 CTCTTCCGAGTTCCAACTCGGCGCGTAAATTGTGGTTTGGTAGCCCAAATCCGTGTTTGA 84016 |||| | ||||| || ||||| | | || |||| |||| | ||| || Sbjct 71045 TTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTGCCCCAGAGTGTCGTTAGA 70986 Query 84017 CCAAGCACCTTTAAAATCATAATTCATTA--AAAATATTTTTCCTAAAGACTTTTGCGCC 84074 |||||| || || || |||||| |||| | ||||| | | | | || ||||| || Sbjct 70985 CCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTCCATGTAG--TTTTGGGCT 70928 Query 84075 TCGTCATAGTTTACCACGGCAATCTTGTCGTAACCCGCACTAATAGCGCTTGTTAATTCG 84134 | | |||| || || || ||||| |||| || || ||||| ||| |||||| Sbjct 70927 TTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGATAGCTGATGTCAATTCG 70868 Query 84135 TAAACCCTGCCAGTT---TGCGATTCTAGCTCGTCTAACATTGCGCGCAGTTCCTCTAAT 84191 || ||| |||||| || || || ||||| | |||| | || ||||||| | Sbjct 70867 TATTTCCTACCAGTTGAGTGAGAA---AGTTCGTCAAGCATTTCACGGAGTTCCTTCATG 70811 Query 84192 ATTAAAATGTATGTTTTGGCGTCACGTTCAGCATCCCCCAACGACGGGTTGGCTCCTTTG 84251 | | ||| | |||| ||| | || || | ||||| || ||||| Sbjct 70810 AGGTTGACGTAAACATCACCGTC---TTCTGGGCTTCCAAAGGTAGGGTTAGCGCCTTTA 70754 Query 84252 CCTCCCGGAAATTCCCAATCGATGTCTACACCGTCGAAAAATTTCCATACTTGTAAAAAC 84311 || || || || |||||||| ||||| ||||| |||||||||||||| ||| | ||| Sbjct 70753 CCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTCCAGGTTTGAAGGAAC 70694 Query 84312 TCCTTAACCGAATTTACAAAAACGTTTCTTTTT-TCAACATTGT--GCATGAAATAA-AA 84367 || || || || | || || |||| || || |||| | | ||| || || Sbjct 70693 TCTTTGACTGAGTCAACGAAGCGAGTTCTCTTGGTC----TTGTCAGTAAAAAAGAAGAA 70638 Query 84368 CGGGTCCGACAACGTCCATCCTCCTATGGACGGAAGAATCTTTAGGTGCGGGTTCGCCAA 84427 ||| || | ||| ||||||||||| || || ||||||||||| |||| || |||| Sbjct 70637 CGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTCAGGTCTCGCTTG 70578 Query 84428 TTTAGCTGCCATCAATTGTCCAAAATTGCCTTTATACGGTTCGTTCCAAGCGGACACGCC 84487 ||| || ||||| ||| || || |||||||| || ||||| ||||||| || | || Sbjct 70577 TTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCAAGATGATAGACC 70518 Query 84488 CTTTTGGGGCTTTTGTACGGCGGCCCACGGATCGTGGATGGCAATTTTAAAATCCGCACG 84547 || || || || |||| ||| ||||| |||||||| || | | |||||| ||| | || Sbjct 70517 TTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTTAAAGTCCTCGCG 70458 Query 84548 TCCCCTGCACGATCGTTGCAGAGATTCGAAACTACCGGGTATCACTTTGAGAGCATCGTT 84607 || ||||| || ||||| || | || |||||| || || | || | | ||||| Sbjct 70457 ACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTTTAAACTGTCGTT 70398 Query 84608 TATTCCATTACCGCCGCAAATGGGTATGAAACCGTACAACAAGTGTGATAAATTTGGCAA 84667 || |||| || || ||||| || || ||||| |||| | ||| | || ||| || | Sbjct 70397 AATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGTTAGATTGGGAAT 70338 Query 84668 GGGAACTTTGTCTACGGGAAAATTGCGCCCGTACACTCCCCATTCAACAAAATACGCAGC 84727 || || || ||||| || || | | ||| || |||||||| |||||||| || | Sbjct 70337 TGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCACAAAATAAGCGCC 70278 Query 84728 AAC 84730 ||| Sbjct 70277 AAC 70275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358088743659394