Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008952.1 Length=4063 Score E Sequences producing significant alignments: (Bits) Value seq291 219 1e-53 seq2226 214 5e-52 seq1956 176 1e-40 seq1125 123 6e-25 seq2638 86.0 2e-13 >seq291 Length=144494 Score = 219 bits (242), Expect = 1e-53 Identities = 196/245 (80%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 54 TACAGTTGGAATCGCAACAGCGTACGGTGCATAATTCCTAGATGCAGCTTCAGCTGTGAG 113 |||||| | | | ||| | | ||||||||||||||| ||||||| ||| | || ||| Sbjct 8161 TACAGTCTGCAACACAAGACCTTACGGTGCATAATTCTAAGATGCACATTCGGGTGAGAG 8220 Query 114 TAGGAGTTTTGCCGTTGCAATGTCAACCCAATGCACCAGGATGCATTTGACTCAAAGTGC 173 ||||| ||| ||| ||||||||||||| | ||||| |||||| |||||||||| | ||| Sbjct 8221 TAGGAATTTCGCCATTGCAATGTCAACTCGATGCATTAGGATGTATTTGACTCAGAATGC 8280 Query 174 AGTTGAATTTTTTCACCGCAAACGGTGCTCGCTAGCCTCCGGGTACGCTTGTAGATGAAG 233 ||||||||||||| |||||||||| || | ||||||||| || |||||| | ||||| | Sbjct 8281 AGTTGAATTTTTTTACCGCAAACGATGGTTTCTAGCCTCCTGGCACGCTTCTGGATGAGG 8340 Query 234 TCTAGGCATAAATCTCTGCAATAGATTCTCAGGTGTTGCATAGAAAGGTAAGAAGATAAA 293 ||||||||| |||||||| || || ||||| ||| | ||||||||||||||| | | Sbjct 8341 TCTAGGCATGAATCTCTGTAAAAGTCTCTCAAACGTTTC--AGAAAGGTAAGAAGACAGA 8398 Query 294 CGGCG 298 | ||| Sbjct 8399 CCGCG 8403 >seq2226 Length=56164 Score = 214 bits (236), Expect = 5e-52 Identities = 212/278 (76%), Gaps = 26/278 (9%) Strand=Plus/Plus Query 1046 CTTTTCGTACGTTGCGACGTGTTCTCTGATCGGCTCGAGGCGCTGGTGATAAGCCTGAGT 1105 || |||||| ||||| || | ||||| ||| ||| | || ||||| ||||| |||||||| Sbjct 31310 CTATTCGTATGTTGCAACATATTCTCCGATGGGCCCAAGTCGCTGTTGATACGCCTGAGT 31369 Query 1106 AGAATACAT----GGTTTTTTCTTCAAAGATAGCACCGTCGCTGCATCTCGCTCTATTGT 1161 |||||| | ||||||||| | || ||||||| | ||||||| Sbjct 31370 AGAATATTTTGGTGGTTTTTTCCTACAAAATAGCACAG---------------CTATTGT 31414 Query 1162 GTGACCGCGAGCTCCATGCGGCGTTGGAGAGTCACGTGCGTCGCTGTCTCATCGGTAGCT 1221 ||||| |||| |||||||||||||||||||||||||||| || |||| |||||||||| Sbjct 31415 GTGACTACGAGTTCCATGCGGCGTTGGAGAGTCACGTGCGCTGCGGTCTTATCGGTAGCT 31474 Query 1222 CGATGGTGCGGCCGAGATACGGAGCACCTGGTTGTCGTGGACGTTAATCTTGTACGGAGT 1281 ||||| ||||||| ||| ||||||| |||||||| |||| | ||||||||| | Sbjct 31475 CGATGTTGCGGCCAAGACACGGAGCGCCTGGTTGGCGTGCAAGTTAATCTT-------GC 31527 Query 1282 TGGAAAAAGTTAGCATGTCAAGAGGTATGCACTTTGTA 1319 | |||| ||| |||||| ||| | |||||||||||||| Sbjct 31528 TCGAAACAGTAAGCATGACAAAACGTATGCACTTTGTA 31565 >seq1956 Length=386552 Score = 176 bits (194), Expect = 1e-40 Identities = 150/184 (82%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 111 GAGTAGGAGTTTTGCCGTTGCAATGTCAACCCAATGCACCAGGATGCATTTGACTCAAAG 170 |||||||| || ||| |||| |||| ||||| ||| ||||||||||||||||| | Sbjct 249013 GAGTAGGAATTCCGCCATTGCCATGTAAACCCCTAGCATTAGGATGCATTTGACTCAGAA 248954 Query 171 TGCAGTTGAATTTTTTCACCGCAAACGGTGCTCGCTAGCCTCCGGGTACGCTTGTAGATG 230 |||||||||||||||||| | |||||| || | ||||||||| || |||||| | | | Sbjct 248953 TGCAGTTGAATTTTTTCATCACAAACGATGGTTTCTAGCCTCCTGGCACGCTTCTGGGTA 248894 Query 231 AAGTCTAGGCATAAATCTCTGCAATAGATTCTCAGGTGTTGCATAGAAAGGTAAGAAGAT 290 | |||||||||| ||| ||||||| ||| |||||| |||||| ||||| |||||||||| Sbjct 248893 AGGTCTAGGCATGAATTTCTGCAAAAGACTCTCAGATGTTGC--AGAAATGTAAGAAGAT 248836 Query 291 AAAC 294 |||| Sbjct 248835 AAAC 248832 >seq1125 Length=62062 Score = 123 bits (136), Expect = 6e-25 Identities = 241/353 (68%), Gaps = 40/353 (11%) Strand=Plus/Minus Query 1454 ATAGTTGCC-TATTATTACAGTATTATTACTATTATTTCTAATGGGTGATGCAATAATAT 1512 ||||||| |||||| ||| |||| || ||||||||||||| ||||||||||||||| Sbjct 54337 ATAGTTGTTGTATTATAACAATATTCACAC-ATTATTTCTAATGTGTGATGCAATAATAT 54279 Query 1513 TAACCGCAATTGACA--TTTTGCCATTGTTCATTACATCTAATTCAGGACTTTTGCCTAA 1570 ||| ||||| | | ||| | |||| | |||| | || ||||||||| ||||||| Sbjct 54278 TAA--TCAATTAATAATATTTACTATTGCTGATTAATTTTATTTCAGGACTACTGCCTAA 54221 Query 1571 CATTTTTTCCTTAAATTGCGTCATGGGATTTCAATCCAATTGTTCATTGTATGGCAATTG 1630 ||| | |||||| |||| |||||| || || |||| | | | | | |||| | Sbjct 54220 TTATTTATTCTTAAA-TGCGCCATGGGTTT---ATTTCATTGCTTAATATGTTGCAACTC 54165 Query 1631 TTATCAGCTGGCTGAGTATATAACGTCTCTAAATGCCTCATGAT-TTCATTCGCTCATCG 1689 ||||||| | | ||||||| || | ||| | || |||| ||||| |||||||| Sbjct 54164 ATATCAGC-GAGTTCCTATATAAAGTACTTGAATCCTTCCTGATATTCATAAGCTCATCG 54106 Query 1690 ACAGCCACTGCGTGAACAAGTTCTTTCGGAACAATACTGTGACCAAGCTCTTCCAAAGCA 1749 || |||| || ||||||| |||| ||||| |||| |||| Sbjct 54105 ACTCCCACGGCCTGAACAA---------------------GACCTAGCTCCTCCAGAGCA 54067 Query 1750 AAGGC-------ATCATCGTCCGCTCTCTATGTAAGTATCCAACATTACAATC 1795 | | |||| |||| | |||||||||||||||||| |||| |||| Sbjct 54066 TCGACCGTTAATATCAACGTCGGATCTCTATGTAAGTATCCAGCATTTAAATC 54014 >seq2638 Length=158602 Score = 86.0 bits (94), Expect = 2e-13 Identities = 99/130 (76%), Gaps = 10/130 (8%) Strand=Plus/Minus Query 2390 TTTTAAATAAATATTATTATAAAATATTTCTTGGTATCATTGACGTAGAATAAGCTGACG 2449 |||| ||| || ||||| ||| || |||||||||||| |||| ||||||| ||||||| Sbjct 1528 TTTTTAATGAAAATTATATTAA--TACTTCTTGGTATCACTGACATAGAATATGCTGACG 1471 Query 2450 CGAGACCGCGTCCAGTAGGTATCCCTTATGAACTCACTTATGAACATGGCTGAGCTTAAG 2509 ||| || |||||| || |||||| ||||||| | || ||||||||| || | Sbjct 1470 CGACAC--AGTCCAGCAGATATCCC-----AACTCACCCACATACTTGGCTGAGC-TAGG 1419 Query 2510 CCACGATCGG 2519 ||||||||| Sbjct 1418 TCACGATCGG 1409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12888435364220