Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008967.1 Length=3841 Score E Sequences producing significant alignments: (Bits) Value seq3217 98.7 2e-17 >seq3217 Length=8202 Score = 98.7 bits (108), Expect = 2e-17 Identities = 258/394 (65%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 1678 AACGTTGTGGAAACTTTCTACCTACAAGTGCGAAACTAAGTTTATCGATGGGAAGCAGTT 1737 ||| |||||||| || || || ||| | ||||| | || ||| | ||||||| | Sbjct 6993 AACATTGTGGAAGCTGTCGACATACCGGACTGAAACCATATTCATCAACGGGAAGCCAAT 6934 Query 1738 GGAGATCGAGTACAATTTCGATGCTACAAGACCCGAAGAAAATCGCATCCTCATCAACAC 1797 ||||| ||||||||||| | || ||| |||||| |||| || ||||| | | Sbjct 6933 CATCATCGAATACAATTTCGACCCCTCACGACTGGAAGAAGATCGGATACTCATGAGCGT 6874 Query 1798 CGAGTCGCTGTTACCTGTGTTCGGCGGGATCATCTCTACAACAATGGACAAGTTTGCAAG 1857 ||||| ||| ||| | || || | ||| | ||| ||| |||| || || || | Sbjct 6873 AGAGTCTTTGTCGCCTATTTTTGGTGAAATCGTGTCTCCAATCCTGGAGAAATTCACAGG 6814 Query 1858 CATATCGAAACTAGAAAACTTTGTCAGGATGCATGTTCATTTGAATATGTGTTCGGACCG 1917 | || || ||| || ||||| | |||||| ||||| ||| || ||||| | Sbjct 6813 GGTTTCCAAGCTAACGAATTTTGTGAAAATGCATACGCATTTAAATCATTGCTCGGAAGG 6754 Query 1918 TCGGTATGCCTCCTGCCCGTGCCATCTGGTCAATGACGGAGGCCCAGGTTGCGAAGAGTT 1977 ||| | ||| |||||||||| || |||| | | || || | | | |||| || Sbjct 6753 TCGATTCGCCACCTGCCCGTGTCACTTGGTTGAAAAGAAAGACCGAAGATTCGAAACTTT 6694 Query 1978 TGTCAAGTCTTTGGTACATGTCTGCGGACACGGACATTTTCATCACTACTGCAGCAAACA 2037 | ||| || | | ||| ||| | ||||| | |||||| ||||| | || Sbjct 6693 TCAAAAGCCTGTAACAGATGCGTGCCCGTATGGACACTATCATCATTACTGTGCGCATCA 6634 Query 2038 CGTCGAAAGCTGGTTGAAGATTTTCGAGAATAAT 2071 | | | | |||||||||| || ||||||||||| Sbjct 6633 CATTGCAGGCTGGTTGAAAGTTGTCGAGAATAAT 6600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12178099552190