Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008979.1 Length=4264 Score E Sequences producing significant alignments: (Bits) Value seq2026 237 4e-59 >seq2026 Length=266388 Score = 237 bits (262), Expect = 4e-59 Identities = 312/437 (71%), Gaps = 28/437 (6%) Strand=Plus/Minus Query 1180 AGAAACCATCGGCTAGCACGTCCGTACCGTCTAGCNNNNNNNNNNNNNNNNNCGATAGCC 1239 || ||||||||||||||||||| ||| |||||||| ||||| || Sbjct 179165 AGGAACCATCGGCTAGCACGTCTGTAGCGTCTAGCAGCAGCAACAT------CGATAACC 179112 Query 1240 ATTTCTGGATTGAGACCATAAAAAGTAAGTTTCGATCTGGCGCTTACAGGAACCGACTAA 1299 ||||||||||| |||| | || |||||||||| |||| ||| ||||| ||||| ||||| Sbjct 179111 ATTTCTGGATTAAGACTGTGAACAGTAAGTTTCAATCTAGCGGTTACAAGAACCTACTAA 179052 Query 1300 TAGAGTCCAATTTTTCCGAAGAACAGGCCGAGGAATTACAAAATTTATTCCATCACGCAG 1359 ||||| ||||||| | ||| ||||||| | |||||||| |||||||||||| | | Sbjct 179051 GAGAGTTCAATTTTACTGAACCACAGGCCAAATTATTACAAAGTTTATTCCATCAAAC-G 178993 Query 1360 CTCGACGAATGCATAACACATTTATCAACAGCGATCGCGTTATGAAAATGCACCAGTGTC 1419 | | ||| || || ||||| ||||||||||| ||||||||| ||| | || | Sbjct 178992 TACAAAAAAT-CAAAA----TTTATGAACAGCGATCGTATTATGAAAAAGCATAACTGCC 178938 Query 1420 GAGAATGTGTGTTCTCAATCTGTCATCAGTGTGTGTCT----------------TTAAGT 1463 | || ||| ||||||| || |||||| ||||||| | ||| | Sbjct 178937 GGGACTGTATGTTCTCGATATGTCATATCTGTGTGTTTAGCTTATGTAGCTGTATTAGCT 178878 Query 1464 TTTTTACACCCAGGCATGACAAGCGGTGACCCGACGACTGCAACTCTCATTGCGCCTCGA 1523 ||||||||| |||| | | || ||| ||| |||| ||||| |||| | ||||| Sbjct 178877 TTTTTACACGTAGGCTGGGGACACGATGATACGATGACTTCAACTGTCATCGTGCCTCAC 178818 Query 1524 ACAACGATCATATGCATATGTCGGCTTGCGTTCTTCCATGACCACACTAATAGATCATCG 1583 | ||| ||||||| |||| |||| |||||||||| |||||||| |||| ||||| Sbjct 178817 AAAACACACATATGCCAATGTAATTTTGCTTTCTTCCATGCCCACACTAGTAGACCATCG 178758 Query 1584 CGTTCCGAGACGGTGAA 1600 || || ||||||||||| Sbjct 178757 CGGTCTGAGACGGTGAA 178741 Score = 179 bits (198), Expect = 1e-41 Identities = 187/244 (77%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 557 GCAAATCCAAACAGAAGAAAAGCAGATCACGCAGACCATAGAAATCGTTACGAAACAAAC 616 ||||| |||||| || ||||||||| | | ||| || |||||| ||| |||||||| Sbjct 177809 GCAAACCCAAACCAAA---AAGCAGATCCCATACACCGTAAAAATCGCTACAAAACAAAC 177753 Query 617 AGAGGCAGTGGAACAACTGATTGCTGCCTTACCAACCGAACAATTACCTAAACGAAGTGG 676 |||||||||| | || ||||||||| |||||||||| || |||| || |||||| Sbjct 177752 AGAGGCAGTGAAGGAAGTGATTGCTGGCTTACCAACCAAA---TTACACAACAAAAGTGG 177696 Query 677 GGCCACTGATAAGAAGTCGCGAGAGCCCGAACTCGCGGCTCCGAGTAAGCCAACCGTTGA 736 ||||||| ||| |||||||| ||||| ||||| |||||| | |||||| || || | Sbjct 177695 GGCCACTCATATGAAGTCGCAAGAGCTTGAACTAGCGGCTTCTGATAAGCCGACTGTGAA 177636 Query 737 GCCAGCACGCGAGACTAGGAAAAAGCCGTCTCAGAAAGCATCAACGTCGCAACCGTCGAT 796 ||||||||| |||| | |||||| ||||||||||| |||| | || || |||| | Sbjct 177635 GCCAGCACGTGAGAGTGAGAAAAAATAGTCTCAGAAAGTATCAGCATCATAATCGTCAAC 177576 Query 797 ATCG 800 |||| Sbjct 177575 ATCG 177572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13531577248085