Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_008989.1 Length=5108 Score E Sequences producing significant alignments: (Bits) Value seq3217 1222 0.0 >seq3217 Length=8202 Score = 1222 bits (1354), Expect = 0.0 Identities = 1467/1982 (74%), Gaps = 130/1982 (7%) Strand=Plus/Minus Query 1463 ACTTAGTTTCTCTTACATAACAAATATTGCAAAAAGATCAAAATGAAGTTCAAGTCCCGA 1522 |||||||| ||||||||||||||| ||||||||| ||| ||| |||||| ||||| ||| Sbjct 8131 ACTTAGTTCCTCTTACATAACAAAGATTGCAAAAGGATACAAACGAAGTTTAAGTCACGA 8072 Query 1523 GGCTAGGAGAAAATTTTTGCTACTATGACCACCGATAACAGTGTCGTGTGTTCTGATCAC 1582 | ||| |||||| || ||| ||| |||||||| |||||||||||||||||| | || Sbjct 8071 GACTA--AGAAAACATTCGCTGCTA--ACCACCGAGAACAGTGTCGTGTGTTCTTAACAT 8016 Query 1583 GGTTTGTTCAGCGCAAATACATTTGACAGATTCTTAGAAGATAAGCATCATAGCGTAATG 1642 ||| |||| ||||||||||||| |||||||||||| |||||||| || Sbjct 8015 -----------CGCGGGTACACTTGACAGATTCTTTGAAGATAAGCATTATAGCGTAGTG 7967 Query 1643 TATTTTAATAGCGTAATGTGCATGTTTGTGAAAATAGGTACATGTTCGCGATAATAGCTG 1702 | | | | ||||||||| |||||||| | | |||||||| || Sbjct 7966 TGT------------------AGGATTGTGAAAAAAGGTACATATCCATGATAATAGATG 7925 Query 1703 TCCGCTTTGTACCGGGCAGACAAAGTCACCGCTAACAGGTTTAGCGGGCACGTTATACAA 1762 || |||||||| |||||||||||| |||||||||||| ||||| | | ||||| ||| Sbjct 7924 TCGGCTTTGTAGCGGGCAGACAAAACCACCGCTAACAGAATTAGCAGATAAGTTATGCAA 7865 Query 1763 CCGTAGCGTTCGATGCAGTTCATAAAAACAGTTAGTACGGCCCTTATCATTATGTCATTT 1822 || | ||||||||||||| |||| |||| | |||||| |||||| ||||||| || Sbjct 7864 GCGGAACGTTCGATGCAGT----AAAACCAGTCACTACGGCAATTATCAGTATGTCACTT 7809 Query 1823 GGCGGTCAAACCG--AAAACATGTACACGAGTTTCTACCTAAATAACGTGATGCAATAGA 1880 ||| ||||||| ||||||||| | | ||||| || || | |||||| | || Sbjct 7808 GGCAGTCAAACTAGCAAAACATGTGAATAAATTTCTGTTTACATTAGTTGATGCCACAGG 7749 Query 1881 ACGAATTGAAGTCACCTTGCCGATC--GAAG---TATCA------CAAGCGTTGCATCCA 1929 ||||| ||||| ||| || ||||| || | ||||| || ||||||||| || Sbjct 7748 ACGAAGTGAAGGCACGTTATCGATCTGGATGGTTTATCAAAGTATCACGCGTTGCATACA 7689 Query 1930 CTTTGAACGATAGCGGTAAGAGCACGCCTTTGGCGAAACAGACAGATTATCACGTGTGAC 1989 | ||| || || ||| | || | ||||||||| ||||||||||| || Sbjct 7688 GCT-GAATCTTACCGTAAAGGT---GTTTTATTCTTAACAGACAGGTTATCACGTGTAAC 7633 Query 1990 CTTT-AGTCTTATCACCAGATATTTCCTATGGTTCCCAAAGTTTTGGTGCTAGCGTTATT 2048 || ||| | ||||| |||||||||||||| |||||||||| ||||||||||||| Sbjct 7632 TTTCGAGT-TGATCACGAGATATTTCCTATGCTTCCCAAAGTA--GGTGCTAGCGTTACC 7576 Query 2049 CACGAGTATATGGAATATTATTCTGTCTCGACAGTGAAT---GATTG-----AAAAAACA 2100 | ||| ||| || |||||||||||||| ||| | ||| ||||| |||||||| Sbjct 7575 CGCGACTAT--GGGATATTATTCTGTCTTGACGTTAAATAATGATTGGAATAAAAAAACA 7518 Query 2101 ATACTTTGGAGCAGTA-AGACTTGTTTTATTCTTCCTATGGTCCAAAACGGAGTCTTTTT 2159 ||||||||||| ||| ||||||||||||||| | |||||| ||| ||||||||| Sbjct 7517 ATACTTTGGAGTAGTTGAGACTTGTTTTATTCAT---ATGGTC--AAATCGAGTCTTTTA 7463 Query 2160 TAATACATATTCGAACCTCTTGTTATGGAAATATTTATACGGTTTAAACTTTGAGAATCT 2219 |||| ||| |||||||||||| |||| ||||||||||| | |||| || | Sbjct 7462 TAATGCAT--TCGAACCTCTTGATATG----TATTTATACGGATCAAACAAGGAAAGCAC 7409 Query 2220 GTGGCTCGGTGGATCTACCGATAATGT--CGCACACGTAAATAAATCCATAGATTAATAC 2277 ||||||||| |||| | ||||||| |||| |||||||||||| |||| || ||| Sbjct 7408 ATGGCTCGGTACATCTTTCAATAATGTGACGCATACGTAAATAAATTGATAGCTTTATAG 7349 Query 2278 GCGTCATGACTATATATAGAGAAACCGATAGCTTTAATTGACTAATATCCGGAAAACGCT 2337 | ||| ||||| | || ||||| |||||| | |||||| | ||| | ||| | Sbjct 7348 GTTTCAGGACTACAAATTTTGAAACTGATAGCCTGGATTGACATGTTTCCTGTAAAAGTC 7289 Query 2338 TGAACCTGTAGAACTCATTCGACCATCGCGCTGTACGCTAGTTTTTTCCTCCTGTTGTAA 2397 ||| ||||| ||| |||||||| ||| |||| || ||||||||||| | || || Sbjct 7288 TGATACTGTACAACGTATTCGACCGTCGTACTGTTCGGTAGTTTTTTCCGTGTATTACAA 7229 Query 2398 AGTGCGCGTTTCCTCGTAAAATTACAATGAATTCAAAAGCAAATAAAGTGG--TCAAGAG 2455 ||||| ||||||| || | ||| ||||||||| || ||||| | || |||| | Sbjct 7228 AGTGCATATTTCCTCATATATTTATAATGAATTCGGGAGACAATAACGCGGCGTCAAAA- 7170 Query 2456 ACGCCGCCACGTTTCCAGAAGTACGTCTGCACCAGCATCACCACTCTTGACGCCAAAGAG 2515 ||||| | | || |||| | ||||| ||||| ||||| || || ||||| Sbjct 7169 -CGCCGTTGCATCTCTAGAAACAGCGCTGCATCAGCAGCACCAGCCTCACCGTCAAAGCA 7111 Query 2516 AATTACTTTTCCGTTGGAGATGATTCTTTACATGGCCAACTTCATGTGCTTCCAAGACTA 2575 ||| |||| ||||||| || | || | ||||||| |||||||||||||||||| || Sbjct 7110 AATAGATTTTTCGTTGGACATCTTCCTCTGTATGGCCAGCTTCATGTGCTTCCAAGATTA 7051 Query 2576 CAGAAGGTTTATTCTGTCTCTTTATCCCAATTACGTCATGAGCGATCTCATTTGGAAAAA 2635 ||||| ||||| || |||| | |||||||||| | ||||||| ||||||| | || Sbjct 7050 CAGAAATTTTATCCTCGCTCTCTGTCCCAATTACTTAGAGAGCGATATCATTTGTAGAAC 6991 Query 2636 ATTGTGGGAACTATCTACTTACCGGACCGAAACCGTGTTCATCAACGGGAAGCCAATGGT 2695 ||||||| | || || || |||||||| |||||| | |||||||||||||||||||| | Sbjct 6990 ATTGTGGAAGCTGTCGACATACCGGACTGAAACCATATTCATCAACGGGAAGCCAATCAT 6931 Query 2696 CATCGAGTACAACTTCGACCCCTCGAGAATAAGAGAAGATCGCATACTAATGAATGTCGA 2755 |||||| ||||| ||||||||||| || | ||||||||| ||||| |||| || || Sbjct 6930 CATCGAATACAATTTCGACCCCTCACGACTGGAAGAAGATCGGATACTCATGAGCGTAGA 6871 Query 2756 AACTTTGTCGCCTATTTTTGGCAGAATCGTGTCTCCAACCATaaaaaaaTTCACAGGGGT 2815 ||||||||||||||||||| |||||||||||||| | | | |||||||||||||| Sbjct 6870 GTCTTTGTCGCCTATTTTTGGTGAAATCGTGTCTCCAATCCTGGAGAAATTCACAGGGGT 6811 Query 2816 TTCCGAGCTGAAGAATTTCGTTAAAATGCACACTCATTTGAATCAGTGCTCGGGAGGTCA 2875 |||| |||| | |||||| || |||||||| || ||||| ||||| ||||||| ||||| Sbjct 6810 TTCCAAGCTAACGAATTTTGTGAAAATGCATACGCATTTAAATCATTGCTCGGAAGGTCG 6751 Query 2876 ATTCGCCAGCTGCCCGTGTCACTTGGTTGACAAGAACGGCCGAGGCTTGGAAGCCTTTGA 2935 |||||||| ||||||||||||||||||||| ||||| | |||| | || ||| | ||| | Sbjct 6750 ATTCGCCACCTGCCCGTGTCACTTGGTTGAAAAGAAAGACCGAAGATTCGAAACTTTTCA 6691 Query 2936 AAAGCCTCTGACGGATGCCTGCCCGTATGGACACTATCATCACTATTGTGCACATCACGT 2995 ||||||| | || ||||| ||||||||||||||||||||||| || ||||| |||||| | Sbjct 6690 AAAGCCTGTAACAGATGCGTGCCCGTATGGACACTATCATCATTACTGTGCGCATCACAT 6631 Query 2996 TGCAAGCTGGTTGAACATTCTTGAGGGTATTTTAATGCAGCTGCAACAACAACGCCATTG 3055 |||| |||||||||| || | ||| || ||| || | ||||| |||||| ||||| Sbjct 6630 TGCAGGCTGGTTGAAAGTTGTCGAGAATAATTTGATACTGCTGCGACAACAGGGCCATCA 6571 Query 3056 TTTCAGCGAAGACCTCGCCCGGAGCTTCATCCTTTCTATGGATGAATCTGTCTACGTTCA 3115 |||||| || |||||||||||||||||||| ||||| |||||| |||| |||||| ||| Sbjct 6570 TTTCAGTGAGGACCTCGCCCGGAGCTTCATACTTTCCATGGATAAATCCATCTACGCTCA 6511 Query 3116 TGGGGTCGAGATGCAGCGTCACGGTTGCATACTCTACAGAATGCTAACAATGTAATGTTA 3175 ||||||||| ||||||| |||||| |||| ||||| || | | |||| | || || Sbjct 6510 TGGGGTCGAAATGCAGCTGTACGGTTCCATAATCTACGGACCGTTCACAAGATGATCTT- 6452 Query 3176 TCACTTTTTGCGGCAGCCGCATAGCTCAGTAGCGTTCATTTATCATT---CTTATAGTTC 3232 ||||||||||||||| ||| |||||| | Sbjct 6451 ----------------------------GTAGCGTTCATTTATTATTCTGCTTATACGGC 6420 Query 3233 CAC----AAGCTTTTAGTAATAAAGTTTGTTCTAAAAATAGTTTAATGTACGCCGGCACT 3288 | || || | || ||||| |||||||||||||||||| || || | |||| Sbjct 6419 ATCTGTAAATTTTATGGTGATAAA---AATTCTAAAAATAGTTTAAT-TATGCTGCCACT 6364 Query 3289 TTGTATATTCATATAAATTGTAATATAAATAATGAGTTGTTTTATTTTTCCTTCCTGCTT 3348 ||||||||| |||||||| ||| | | | |||| ||||||||||||||| |||||||||| Sbjct 6363 TTGTATATTGATATAAATGGTAGTGTGAGTAATTAGTTGTTTTATTTTTTCTTCCTGCTT 6304 Query 3349 CTCATGTAGGTAA-CAGCA--TATGCGCAATAAGAATTTATCGTTTAACACTTGTCGGTT 3405 | ||||||| || ||| || | | |||||| ||||||| |||| ||||||| Sbjct 6303 CATATGTAGGCAATTTGCAGTTACGTGGTATAAGATTTTATCG-CGAACATCTGTCGGTC 6245 Query 3406 GC 3407 || Sbjct 6244 GC 6243 Score = 434 bits (480), Expect = 3e-118 Identities = 359/437 (82%), Gaps = 16/437 (4%) Strand=Plus/Minus Query 3740 TTGTTTGTAGCGCGTGTCGCATACGCAGCGCCACCACTCGACATGCGTCAGTACTGTGAA 3799 |||||||||||||||| ||||||| || | |||||||||| ||||||||||||| Sbjct 6240 TTGTTTGTAGCGCGTG-------CGCAGCGTCATCGCTCGACATGCATCAGTACTGTGAA 6188 Query 3800 ACAAAGCACACATGTACCAGCGTCTACTAGGTTCAGAACaaaaaaaaTTTG---TACAAA 3856 ||| | ||||||||||| || ||||||||| |||| | | ||||| || |||||| Sbjct 6187 ACAGACCACACATGTACGAGGGTCTACTAGCGTCAGCAGTACAAAAACTTTCTCTACAAA 6128 Query 3857 CTTTCGGTCTTTCCTCCAAGCCACCTTTGTCGT-CGCTCCTTAGAACAGAGCAGACTAAT 3915 ||||| || |||||| ||||||||||||||||| |||| | |||| ||| |||||| || Sbjct 6127 CTTTCAGTTTTTCCTTCAAGCCACCTTTGTCGTTCGCTACGTAGAGCAGTACAGACTTAT 6068 Query 3916 CATGCACATTGTAGCTACAACCGTTGGAGAGATTTGAGTGCTGCCGTAGATAGTGTAAGA 3975 ||||||| ||||||| ||| |||||| | ||||| |||||||||||| |||| ||| Sbjct 6067 CATGCACGTTGTAGCCACAGCCGTTGAAAAGATT-----GCTGCCGTAGATCGTGTGAGA 6013 Query 3976 CCACTGTACGTTCTTCGCTATTCAAGGTTTCAGACTGTTCGTAGAACGTGCTGGCTGGCA 4035 |||||| ||||| | || |||||||||||||||||||||||| ||||||||||| |||| Sbjct 6012 CCACTGAACGTTTTCCGGTATTCAAGGTTTCAGACTGTTCGTGGAACGTGCTGGTCGGCA 5953 Query 4036 GAGGGTTATCATAATCATTGTGGCTTCAGAAAGTTATGGTTCAGTTGAAAACGTTCACTA 4095 ||||||||||||||||| ||||||||||||||| | | ||||||| |||| |||||||| Sbjct 5952 GAGGGTTATCATAATCACCGTGGCTTCAGAAAGTCACGTTTCAGTTAAAAATGTTCACTA 5893 Query 4096 GGGTATCCTCTGTAGCAGATAACGCTGTGGCACTACTAAGACGCATGGCACTGGTTTCAG 4155 | |||| || ||||| || | | | || ||||||||| ||| ||||||||| |||| Sbjct 5892 GATTATCTTCCATAGCACATGAGCCCGCGGAACTACTAAGGCGCGTGGCACTGGCCTCAG 5833 Query 4156 TGATTGGTCAGGCCATG 4172 ||||||||||||||||| Sbjct 5832 TGATTGGTCAGGCCATG 5816 Score = 307 bits (340), Expect = 3e-80 Identities = 226/262 (86%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 4298 CATACTCGGACGATCTGCTATGGATGCAATGGATATTGATAGGAAGTACACACGTAATAG 4357 ||| ||| | |||||||||||| |||||||| |||||||||| | || |||||||||| Sbjct 5803 CATGCTCAGGCGATCTGCTATGAATGCAATGACTATTGATAGGGAAAACGCACGTAATAG 5744 Query 4358 TGAACATGCTGCCGAGCATGTTCGTCGGACGGTACAGAGACAGTGGTTATTGAGTACGAT 4417 || ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 5743 TGTACATGCTGCCGAGCATGTTCGTCGGACGGTACATAGACAATGGTTATTGAGTACGAT 5684 Query 4418 ATGATTGGAGCCAC--AACTAAAACTTCAACATCTTTGCACGATAGTTTTCACCCCTGAG 4475 |||||||||||||| || ||| |||||||||||||||| |||||| ||| | ||||| Sbjct 5683 ATGATTGGAGCCACTGTACCAAAGCTTCAACATCTTTGCATGATAGTCTTCTCTTCTGAG 5624 Query 4476 TATGACAATCTCATACTGGCTCTCCCTCGAAATGCTTCTCTATGAAATTATAGACCGTAC 4535 ||||| ||| |||| || || |||||||| |||||||||| |||| || |||||||||| Sbjct 5623 TATGAAAATGTCATTCTAGCCTTCCCTCGAGATGCTTCTCTTTGAAGTTGTAGACCGTAC 5564 Query 4536 GCGCTTGAGCGATTGACTGTAT 4557 || ||||||| |||||||||| Sbjct 5563 GCTCTTGAGCCGTTGACTGTAT 5542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16232133218145