Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq566 223 3e-53 seq5066 127 2e-24 >seq566 Length=99533 Score = 223 bits (246), Expect = 3e-53 Identities = 350/494 (71%), Gaps = 9/494 (2%) Strand=Plus/Plus Query 20446 GCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTACCCGTT 20505 || |||||||| |||||||||||||| || || | || |||||||| ||||| || Sbjct 70281 GCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATT 70340 Query 20506 CCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTATCAAC 20565 |||||| | |||| || || ||||| ||| | |||||||| || |||||||| || ||| Sbjct 70341 CCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAAC 70400 Query 20566 GACGCGTTAAAGTTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCGTGCGCGGGC 20625 ||| |||||| | | ||| |||| ||| | |||||||| ||| || Sbjct 70401 GACAGTTTAAAG--GAAATCGAAGGA-AGTTTCCAAGCACTTCAACGTTCTTGCAGTGGT 70457 Query 20626 CGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAACCACAAAAA 20685 || || | |||||||| | || |||||||| ||||| || |||||||||| || ||| Sbjct 70458 CGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAA 70517 Query 20686 GGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATGGCAACGAAA 20745 || |||| |||||||| ||||| |||||||| ||||| ||||| ||||| || |||| Sbjct 70518 GGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAA 70577 Query 20746 CTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTATCCGATCCG 20805 | ||| ||| | || || | || ||||| || || || ||||| || | |||||| Sbjct 70578 CAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCG 70637 Query 20806 TTTTATCATATGCAC-GATCCGATCGTACGCCAAGT--TTTCATCGATTCTGTGGAAGAG 20862 || | || | | || || || | | | || | ||| | || || || ||||| Sbjct 70638 TTCT-TCTTTTTTACTGACAAGACC--AAGAGAACTCGCTTCGTTGACTCAGTCAAAGAG 70694 Query 20863 TTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTTCCGGGAGGC 20922 || | || |||||||| || || || |||||||| || |||||||| || || || Sbjct 70695 TTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGT 70754 Query 20923 AAAGGTGCGAATCC 20936 ||||| || || || Sbjct 70755 AAAGGCGCTAACCC 70768 >seq5066 Length=19128 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||||| |||||||||||||||||||| |||||| Sbjct 18852 ATTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCG 18793 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| ||||||||| || || ||||| | || | ||| || || || || Sbjct 18792 GATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGG 18733 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| |||||| ||| | | ||| | ||| |||| | ||| Sbjct 18732 GGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCA 18673 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || ||||| || || ||||||||||| Sbjct 18672 ACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | ||||| || |||||||| || || || Sbjct 19080 ATACCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTC- 19022 Query 114213 CTCATAGT--ACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | ||||| |||| ||||||||||| || ||||| |||| | ||||||||| || | Sbjct 19021 -TGATAGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTG 18963 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | ||||||||||||||||| ||||||| ||| | | || | || || | | || Sbjct 18962 GGGGAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTT 18903 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | ||||| || || |||||||| || ||||||||||| Sbjct 18902 CAACTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420092100474732