Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1957 93.3 8e-14 >seq1957 Length=467265 Score = 93.3 bits (102), Expect = 8e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 |||| || || || ||||| | ||||| | ||||||||||| |||||||| | | | Sbjct 419412 TGTTTAATGCTATTGAGACATTACCCTGTGTAAAGAAGAAGGCTGACTGGGCTATGCAAT 419471 Query 42670 GGATCGAGAGTCCCGAC-GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||| | || | ||| ||||| ||||| || | | ||||| ||| | || || || Sbjct 419472 GGATTGCAAG-CAAGACTGCAACTTTCGGTGAACGTATTGTAGCTTTTGCTGCAGTTGAA 419530 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 ||||| |||||||| || ||| || || || |||||||||||| ||| || ||| Sbjct 419531 GGCATATTCTTCTCTGGAAGCTTTGCATCAATATTCTGGCTCAAGAAGAGGGGACTTATG 419590 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || ||| | || ||| || || || || ||||| |||| Sbjct 419591 CCAGGATTGACTTTCAGCAATGAGCTGATTTCAAGGGATGAGG 419633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944241685173360