Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5066 147 5e-30 seq1291 86.0 1e-11 >seq5066 Length=19128 Score = 147 bits (162), Expect = 5e-30 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | |||||| | |||| || || ||||| ||||||||||| | Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGAT 19018 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||| || || || ||||||| |||||||||| |||||| Sbjct 19017 AGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGA---TCTGGG 18961 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || || || || ||||| || || || |||| ||| | ||| Sbjct 18960 GGAATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCA 18901 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| || || || || || ||||| || ||||| ||||||||| Sbjct 18900 ACTTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCATT 18850 >seq1291 Length=99781 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| ||||| || || ||||| || ||||| ||||| || | ||| || || Sbjct 93325 GGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCGATGGTATCAGACGGCTCG 93266 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 93265 ACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 93216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179529540585958