Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq566 313 2e-80 seq538 226 3e-54 seq5066 122 9e-23 seq1291 84.2 2e-11 >seq566 Length=99533 Score = 313 bits (346), Expect = 2e-80 Identities = 665/983 (68%), Gaps = 21/983 (2%) Strand=Plus/Plus Query 27464 GTCGTCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGTAATTTTGCCGCGGACCGC 27523 || || | ||| || ||||| |||||||| || ||| | || || ||| || ||| Sbjct 70272 GTAGTTGGCGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGC 70331 Query 27524 GTACCGGCGCCCAACCTGTCACATTTACTATACGGGTTCGTGCCGATATGCGGCGGCGAC 27583 ||||| ||||| || | || | || || || || | || || || || || || Sbjct 70332 GTACCAATTCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGAT 70391 Query 27584 GGCATCAACGACAGCCTTAAAACTATTCCG-GGTAGTTTCGAAGCGTTGCAAAAGTCGTG 27642 ||||| |||||||| ||||| | || || |||||| |||| | ||| || || Sbjct 70392 GGCATTAACGACAGT-TTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTG 70450 Query 27643 CGCGGGTCGTGAAAACTTTAAAGTGGCCATTCACGATCCGTGGGCTGCATTGCAAAAACC 27702 | ||||| || |||||||||| | ||||||||||| ||||| || || || ||||| Sbjct 70451 CAGTGGTCGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACC 70510 Query 27703 ACAAAAAGGCGTTTCGGCTTGGACGGAACAATACAAAGGTAATTTTGGACAGTTAATGGC 27762 || ||||| | || |||||| |||| ||||||||| || || || || | ||| | Sbjct 70511 TCAGAAAGGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTC 70570 Query 27763 GATAAAGCGTGCAAACCCGCATTTAAAAATTCTACCGTCCATAGGAGGGTGGACGCTGTC 27822 | || | || | || | | || ||||| || || || ||||| ||||| || | Sbjct 70571 ATTGAAACAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGC 70630 Query 27823 GGATCCATTTTACTTTTTT-----CACGACGCTGGCAAACGCGCCACATTCGTCGAATCG 27877 ||||| || | ||||||| || ||| | | ||| ||| ||||| || || Sbjct 70631 TGATCCGTTCTTCTTTTTTACTGACAAGAC-CAAGAGAACTCGC----TTCGTTGACTCA 70685 Query 27878 GTTCGCGAATTTCTGCAAACTTGGAAATTTTTCGACGGCGTGGACATCGATTGGGAATTT 27937 || || || || ||||| |||||||||||||| || || ||||| |||||||| || Sbjct 70686 GTCAAAGAGTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTC 70745 Query 27938 CCTGGCGGTAACGGCGCAAACCCACTGTTAGGCGATCCCCAACGAGACGGTTTAGTGTAT 27997 ||||| ||||| ||||| ||||| || || | ||| | ||||||| || || Sbjct 70746 CCTGGTGGTAAAGGCGCTAACCCTACCTTTGG-AAGCCC--AGAAGACGGTGATGTTTAC 70802 Query 27998 GTGGTGTTGTTGCGCGAACTTCGCGATATGCTCGATCAACTCGAACACCACACGGGCCGG 28057 || | || ||||| || || ||||| || |||| ||| || || || Sbjct 70803 GTCAACCTCATGAAGGAACTCCGTGAAATGCTTGACGAACTTTCTCACTCAACTGGTAGG 70862 Query 28058 CAATACGAACTGACAAGTGCAATCGGCGCTGGCTACGACAAAATTGAGGTAGTTGATTAC 28117 |||||||| ||||| || ||| ||||||| | |||||||| |||||||||| ||| Sbjct 70863 AAATACGAATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTAC 70922 Query 28118 AACGAAGCGCAATCGTATTTGGACAAAATCTTTTTAATGAGTTATGATTTTAAAGGCGCT 28177 | | |||| ||| || ||||| | || || | ||||||||||| || || || ||| Sbjct 70923 AGCAAAGCCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCT 70982 Query 28178 TGGTCCAACTCGGATTTGGGCCATCAAACCGCTTTGTATGCGCCCGATTGGAAACCCGAC 28237 ||||| ||| | |||| || || || |||| || || || || ||||| || | Sbjct 70983 TGGTCTAACGACACTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAA 71042 Query 28238 GAGCGGTATACGACCGATTTTGCGGTGCGCTCGTTGCTTCTTCAAAAAGT--ACGTTCCG 28295 || ||||| |||||||||| || | ||| | |||| || || ||| Sbjct 71043 GAAACTTATACTACCGATTTTGGTGTAAAATACTTGTTAGCTCAAGGTGTGAAC---CCG 71099 Query 28296 AA-AAAATCGTGATCGGTGTGGCAATGTACGGTCGCGGTTGGAGTGGCGTATCGGAATAT 28354 || || ||| | |||| |||||||||||||| || || |||| |||||| | || Sbjct 71100 AAGAAGATCATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTCCACGGGTAC 71159 Query 28355 TTAAACGATAATCCCTTTACCGGCATCGCCACAGGCCCGGTGCCCGGCACTTGGGAAGAC 28414 || | |||||||| || |||| ||| ||||| || || || || ||| ||||| Sbjct 71160 GAGGACAACAATCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGGCAAGAC 71219 Query 28415 GGCGTCGTAGATTACCGTCAAAT 28437 || || || |||||| | |||| Sbjct 71220 GGTGTAGTCGATTACAGAGAAAT 71242 >seq538 Length=46986 Score = 226 bits (250), Expect = 3e-54 Identities = 1121/1773 (63%), Gaps = 36/1773 (2%) Strand=Plus/Plus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 || || || |||||| || |||| || || |||||||| || ||||| ||||| || Sbjct 41441 TTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCA 41500 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 |||||||| || ||||||| | | || | |||||| | || | || Sbjct 41501 GTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGT 41560 Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851 | |||| | | ||||| ||||| |||||||| || || || || | ||| || ||| Sbjct 41561 TCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGCC 41620 Query 153852 ATGTCAATCAA-GTTTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTC 153910 || | || ||||| |||| |||||||| || || ||||| | | | | || | Sbjct 41621 ATTTGTATAGTTGTTTTCACTGAA-ATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTT 41679 Query 153911 GTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCAT 153970 | || || ||||| || || | | || | || || |||| ||| Sbjct 41680 TTTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTTCAT 41739 Query 153971 GTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTG 154030 | || || | || | | | ||||||| | | || ||||||| ||||| Sbjct 41740 ATCTTCATCCCATAAGTCAGCTTGGGTTAAATCTGTTAAGAGATGATGGTTAACAACTTG 41799 Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 ||| || || | ||||| ||||| || | || || || || || || ||||| Sbjct 41800 AAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGATTC 41859 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 || || || | ||| || ||||| | || || ||||| || | ||| | || || Sbjct 41860 ATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAATT 41919 Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG 154210 || | ||| || |||||||| |||||| | | ||||| ||||| | ||||| Sbjct 41920 ACGAAGACCATGCTTTGCAATTTTTC-TTTTAAGGCAGTCCAATCCCACAGATCAGTAGG 41978 Query 154211 TTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACT 154270 | || ||||||||| ||||| |||| || ||| || ||||| || |||||| Sbjct 41979 AGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCATAACT 42038 Query 154271 AGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATAC 154330 |||||| || | | | |||||| || ||||| |||||||| || ||||||||| Sbjct 42039 AGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATAGTATAT 42098 Query 154331 GGTTTCGGCAATTTGTTTGTT---TAACATTTTGGCTTTGTCACTTTCGTACGGCAATCC 154387 ||||| ||||||| || ||| ||| |||| ||||| || || || |||| Sbjct 42099 AGTTTCAAATATTTGTTGATTAAGTAAAATT---GCTTCTTCACTCTCATAGGGAAATCT 42155 Query 154388 CAATATACA-AAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTA 154446 || || ||| ||| ||||| || | || |||| || | |||| || || ||||| | Sbjct 42156 CATTA-ACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTCA 42214 Query 154447 AATTCG-ATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANN 154505 ||||| ||||||| || | || ||||| | || | ||| ||||| ||||||| Sbjct 42215 TATTCGAATTCTTT-GCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTTAAA 42273 Query 154506 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCAAACACTCCGCTTTTA 154565 || ||||| ||| | ||| | Sbjct 42274 TTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTATTTTCA 42333 Query 154566 ATAAAACGATTTACACACACAGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTG 154625 | ||| ||| ||| | ||||| || ||||| || || | ||| |||| | || Sbjct 42334 ACAAACATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAG--GTGATG 42391 Query 154626 TAT--TGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 ||| | |||||||||| ||| | || |||||| || ||||| || ||||| |||| Sbjct 42392 TATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGAT 42451 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 | ||| ||||||| | ||||| ||||| || || || || || ||||| ||||| | Sbjct 42452 TACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAACTTGTG 42511 Query 154744 TTTCAATAATTG--TGCGAAACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTC 154801 ||| || |||| | | | | | || | || |||||| | | || ||||| Sbjct 42512 CTTCTATTATTGCTTTCCACAAAACCT--GTGCACGAACTTGTTTTACATAGCGTTTTTC 42569 Query 154802 GCTCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGG 154861 ||||| | ||| || | |||||| ||| || | || | ||| || || Sbjct 42570 TTGTTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCCAGG 42629 Query 154862 ACAGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAA 154921 ||| || |||||||| | ||| |||| |||| || ||| |||||||||||||| Sbjct 42630 GCAGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTTTCATAAACAA 42689 Query 154922 ATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTT 154981 ||| || | ||| ||||| || || || || | || | ||||| || | || Sbjct 42690 ATCTGGTATCCATAAAGCATAGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAGTATT 42749 Query 154982 TCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCAT 155041 ||||||| ||||| ||| | | || |||||||| || || ||||| || || | Sbjct 42750 CTTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATACACTGCAAA 42809 Query 155042 CGCGCCTTTGCGT---TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCG 155098 || || |||| || || ||||||||||| | | || ||||| || || | Sbjct 42810 TGCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATTATAGACTCT 42869 Query 155099 CAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGC 155158 |||| || | | || ||| | || || || ||| || | || ||| Sbjct 42870 TAACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGTTCCTTTAGC 42929 Query 155159 ACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTC 155218 | ||| |||| ||| || | |||||| | | || || ||| ||||| | Sbjct 42930 TCTTATGCAATGCACATGAACACCGATACCTCCAGCTGACTTGGAAATTAATGCACATTG 42989 Query 155219 CGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAA-GAAACACG 155277 | || || || ||||||| ||| ||||| ||||||| | | |||| |||||| | Sbjct 42990 TTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAG-CTACAAGGAAACAAG 43048 Query 155278 AAGATAATTGAGGTTGAGGGCAGCCG--GCCGCAAATAATGTAGGACTAGCGTGTGTAAA 155335 |||| ||||||||| || || || || | ||| | ||| || || || || ||||| Sbjct 43049 AAGACAATTGAGGTCTTGG--AGTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGTAAA 43106 Query 155336 CATTTTGTTGGCGGTT---AAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTG 155392 || || || | | | || |||||||| | || || || || || || ||||| Sbjct 43107 -ATATTTTT--CAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTTCCCCGTG 43163 Query 155393 TATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||| || | || || ||||||||||| || || Sbjct 43164 TATGCCAACAGCAACACGCATCAGCATATGCTG 43196 >seq5066 Length=19128 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||||||||| ||||| | | ||| || | ||| Sbjct 18834 AGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCT 18775 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || ||| |||| | || ||||| || || ||||| |||||||| ||| Sbjct 18774 TCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCT 18715 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || || | ||||| | || ||||||| ||| | || Sbjct 18714 TG-AATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGT 18656 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | ||| || |||||||| ||||| || Sbjct 18655 CTTACCCGTGAGAGTCTTCACGAAAATCTGCATCTT 18620 >seq1291 Length=99781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 64318 CCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCAC 64377 || ||||||||||||||| ||||| ||||| ||||| ||||| ||| ||| || | Sbjct 93341 CCTCTGCTGGTCGGGAGGGATTCCCTCTTTGTCTTGAATTTTAGCCTTCACATTTTCGAT 93282 Query 64378 TGTATCA-CCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAA 64436 |||||| |||| || || || | ||| | ||||||||| || | || || ||||||| Sbjct 93281 GGTATCAGACGGC-TCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAAA 93223 Query 64437 TTTGCATTTTAAT 64449 | ||||| || || Sbjct 93222 TCTGCATCTTGAT 93210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499593205428840