Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq566 165 8e-36 seq538 140 3e-28 seq5066 104 2e-17 >seq566 Length=99533 Score = 165 bits (182), Expect = 8e-36 Identities = 363/536 (68%), Gaps = 6/536 (1%) Strand=Plus/Plus Query 27962 GAAAACAACAAGCGCTTTGATAA-ACATCCCGAGAAAATTGTGGCCGCCTATTTCGTCGA 28020 || || ||||||| |||| | | || || || ||| | || | ||| ||||| || || Sbjct 70236 GAGAAGAACAAGCCCTTTAAGCAGACTTCTGGA-AAAGTAGTTGGCGCTTATTTTGTGGA 70294 Query 28021 GTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCGCCCAACCTGTCGCA 28080 |||||||| || | | || |||| |||||||| || || ||||| || | || Sbjct 70295 ATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATTCCCAATCTAACTCA 70354 Query 28081 CTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGCCCTCAAGAC 28140 | | ||||| ||||| | || || || || || || ||||| |||||| | ||| Sbjct 70355 CCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAACGACAGTTTAAAGGA 70414 Query 28141 CGTTCCCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGGT 28200 | || |||||| | || || || || || ||| || |||| ||||| || || Sbjct 70415 AATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTCGCGAGGACTTTAAAGT 70474 Query 28201 GACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGAA 28260 | || |||||||||||||| ||| | ||||| || || || || | || | ||||| Sbjct 70475 ATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAGGTCTATCATCTTGGAA 70534 Query 28261 CGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAATCCGCACTT 28320 || || |||||||||||||| || ||| ||||| | ||| ||| | || || | Sbjct 70535 TGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAACAAGCGAGACCTGACCT 70594 Query 28321 GAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTCTTTCACATGCAC-G 28379 |||| | || | || || || || ||||| || | || || ||||| | | || | Sbjct 70595 GAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGTTCTT-CTTTTTTACTG 70653 Query 28380 ACGCGACCGTGCGCCAAACG-TTCATCGATTCCGTCGTGGACTTTCTGCTGACCTGGAAG 28438 || |||| | | | || ||| | || || ||| || || || | |||||||| Sbjct 70654 ACAAGACCAAGAGA-ACTCGCTTCGTTGACTCAGTCAAAGAGTTCCTTCAAACCTGGAAA 70712 Query 28439 TTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGAGCCAATCC 28494 || ||||| || || ||||| ||||||||||| || || || ||||| || || || Sbjct 70713 TTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTAAAGGCGCTAACCC 70768 >seq538 Length=46986 Score = 140 bits (154), Expect = 3e-28 Identities = 481/743 (65%), Gaps = 19/743 (3%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| || ||||||||||| || | || || || | || | || ||| || Sbjct 41786 TGGTTAACAACTTGAAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAAT 41845 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 |||||||| ||||| ||||| || ||||| || || |||| || || ||||| || Sbjct 41846 GGTTCAAAAGATTCATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCT 41905 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | ||| | ||||| || | || ||| | ||| | || || || || ||||||| Sbjct 41906 AACAAAAGGGAATTACGAAGACCATGCTTTGCAATTTT-TCTTTTAAGGCAGTCCAATCC 41964 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 ||||| | | || ||| || ||||||||| || ||||| | ||| |||| || ||| Sbjct 41965 CACAGATCAGTAGGAGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGA 42024 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || || || | || ||| || || | |||| ||| || ||||| || | Sbjct 42025 CTTCCATCATAACTAGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAA 42084 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 || ||||||||||| ||||| ||||||| ||| || | |||||||| ||||| Sbjct 42085 GCTCCATAGTATATAGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCA 42144 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 || || | | || | |||||| || || || | ||||| | ||||| ||| || || Sbjct 42145 TAGGGAAATCTCATTAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGC 42204 Query 153447 CGATGCTTC----TCG-TTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 | ||| ||| ||| | || || || || | |||||| || ||| | Sbjct 42205 CTATGTTTCATATTCGAATTCTTTGCTTCTGGC-----ACTGGATAGAAGTTAACATCAA 42259 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 |||| || || | || | || |||||| | | || | ||| | |||| | Sbjct 42260 TAATCTTATTTAAATTTTGTGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAA 42319 Query 153562 AGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGG 153621 | || | | || || | ||| ||| || || || ||||| | ||| || || | Sbjct 42320 AAGTTTTATTTTCAAC----AAACAT--ATTAACAGCTATGGACGCTAAATTGCACACTG 42373 Query 153622 CCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATG 153680 || || || || | | | |||| || || || | ||| ||||||||||||||||| Sbjct 42374 CCACTTCATCAGGTGATG-TATACTCAACAATTTCTGTGCAAAGGTTGCTGCATTTTATA 42432 Query 153681 ACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 ||| | ||||| ||||| ||||| | ||||| | ||||| | | ||| || ||| Sbjct 42433 GTGCCAAGATTTTTTTGATTACTTTTTCTGTTGCAAGAATCTTTATACAACATATATGGT 42492 Query 153741 CCGCCGGTCTCGACTTGCGTTTC 153763 || || || ||||| | ||| Sbjct 42493 GTTCCTGTTTCAACTTGTGCTTC 42515 >seq5066 Length=19128 Score = 104 bits (114), Expect = 2e-17 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACCGG 138478 |||||||||||||| || ||||| | ||||| ||| ||| || ||||| || || | Sbjct 19044 GACTCCTTTTGAATATTATAGTC--TGATAGTGTACGACCGTCTTCAAGTTGCTTGCCAG 18987 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||| | ||||||||| || || || || ||||||||||| ||| | |||| ||| Sbjct 18986 CAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTC-TTGAATCTTTGCTTTG 18928 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | || || | | || || |||| ||| | |||||||| || |||||| Sbjct 18927 ACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTACCTGTAAGAGTT 18868 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 18867 TTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496211154703920