Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq566 174 1e-38 seq5066 107 2e-18 seq1779 82.4 7e-11 >seq566 Length=99533 Score = 174 bits (192), Expect = 1e-38 Identities = 364/538 (68%), Gaps = 6/538 (1%) Strand=Plus/Plus Query 22274 GAAAACAACAAGCGTTTCAAGACGCATCCTAATAAAATTGTCGCCGGCTATTTTGTCGAG 22333 || || ||||||| || ||| | | || ||| | || | || |||||||| || Sbjct 70236 GAGAAGAACAAGCCCTTTAAGCAGACTTCTGGAAAAGTAGTTGGCGCTTATTTTGTGGAA 70295 Query 22334 TGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCGAACCTGTCGCAT 22393 ||||| || |||| | |||| |||| ||| || || | || || || | || Sbjct 70296 TGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCAATTCCCAATCTAACTCAC 70355 Query 22394 TTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGACGCCCTGAAAACG 22453 | || || ||||| | ||||| || || ||||| ||||| |||||| | ||| | Sbjct 70356 CTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATTAACGACAGTTT--AAAGG 70413 Query 22454 GTGCCG--GGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCCGATTTCAAGG 22511 || ||||| ||| | || | ||||| || ||| | | | || || || | Sbjct 70414 AAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGTCGCGAGGACTTTAAAG 70473 Query 22512 TGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTGTCGTCGTGGA 22571 | | || |||||||| ||||| ||| |||| |||||||| ||||| | || || |||| Sbjct 70474 TATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAAGGTCTATCATCTTGGA 70533 Query 22572 ACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCGAATCCTCATC 22631 | ||||| |||||||||||||| |||||| ||||| || ||||| ||||| ||| | | Sbjct 70534 ATGAACCATACAAAGGCAACTTCGGTCAACTGATGTCATTGAAACAAGCGAGACCTGACC 70593 Query 22632 TCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTATCATATGCAC- 22690 | || | | | || || || |||||||| ||| | |||||||| | || | | || Sbjct 70594 TGAAGATTCTTCCTTCTATTGGAGGATGGACATTGGCTGATCCGTTCT-TCTTTTTTACT 70652 Query 22691 GACAAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGATCACGTGGAAG 22750 ||||||| | |||| ||| | || || || |||||| | || ||||| Sbjct 70653 GACAAGACCAAGAGAACTCGCTTCGTTGACTCAGTCAAAGAGTTCCTTCAAACCTGGAAA 70712 Query 22751 TTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGCGAATCCTA 22808 || || || || || || |||||||||||||| || || || || || || || |||| Sbjct 70713 TTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGGTAAAGGCGCTAACCCTA 70770 >seq5066 Length=19128 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| ||||| ||||| ||||||||||| || |||||| Sbjct 18850 TCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCGGA 18791 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || ||||| |||||||| | ||||| || |||||||| || || Sbjct 18790 TAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 18731 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 ||||| || ||||| || ||| |||| | ||| ||||| ||| || | || Sbjct 18730 AATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACGTT-TTCGATGGTATCGGATGGTTCA 18673 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | || | || || || || ||||| || || ||||||||||| Sbjct 18672 ACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCAT 18623 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| ||||||||||| || || Sbjct 19077 CCACCACGGAGACGAAGTACCAAGTGAAGTGTAGACTCCTTTTGAATATTATAGTCTGAT 19018 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || || || || ||||| ||||||| ||||| ||||| || || Sbjct 19017 AGTGTACGACCGTCTTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGA 18958 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| || ||||| ||| | | ||||| || | |||| || |||| | || || Sbjct 18957 ATGCCTTCTTTGTCT-TGAATCTTTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAAC 18899 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | ||||| || || |||||||| || ||||||||||| Sbjct 18898 TTCGAGCGTTATAGTTTTACCTGTAAGAGTTTTAACGAAAATCTGCAT 18851 >seq1779 Length=298985 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/142 (75%), Gaps = 7/142 (5%) Strand=Plus/Plus Query 30519 GTCTCGGGTTCGATTCCCGGGTCGGGCAAATTATTAC-TGGGTTTTTAAATA---AAAT- 30573 |||| | ||||||||| |||||||| ||| | | ||||||||| | |||| Sbjct 9331 GTCTTGAGTTCGATTCTCGGGTCGGATAAAAGGTGATATGGGTTTTTCTGTCGAGAAATG 9390 Query 30574 CTCAGTAGTAGCACGGAGTCTGGAAATGTGCCCGGTATATGGCAATAGGCTCACCCCCTA 30633 ||||||| || || |||||||| |||||| ||| | |||||||||||| ||||||| Sbjct 9391 CTCAGTATTATTCCGAAGTCTGGATTTGTGCCTGGTGTGCGGCAATAGGCTCGCCCCCTA 9450 Query 30634 TTACATGGGACTCATAACATAT 30655 |||| ||| | | |||||||| Sbjct 9451 TTACGTGGAA--CCTAACATAT 9470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475451698598640