Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq566 297 2e-75 seq5066 123 2e-23 >seq566 Length=99533 Score = 297 bits (328), Expect = 2e-75 Identities = 657/977 (67%), Gaps = 19/977 (2%) Strand=Plus/Minus Query 50148 ATTTGTTTGTAATCAACTACGCCGTCTTCCCAAGTGCCTGCCGCCGGGCCGGTGGCGATT 50207 |||| | ||||||| ||||| ||||||| ||| || || | || || || ||| | Sbjct 71242 ATTTCTCTGTAATCGACTACACCGTCTTGCCAGGTTCCCTTGACTGGTCCTGTTGCGTTG 71183 Query 50208 CCCGTAAACGGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATG 50267 || || || ||||||| ||| | ||| ||| ||||| ||| || | |||||||| Sbjct 71182 CCAGTGAAGGGATTGTTGTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTACATT 71123 Query 50268 GCCACGCCTACGATTATTTTGCTCGGCTGCACGTTTTGATCGAG-AAGAACGTTTACCGC 50326 ||||| || ||||| || || |||| | ||| |||| | | ||| | ||||| | Sbjct 71122 GCCACTCCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTAT-TTTACACC 71064 Query 50327 AAAATCGGTCGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATG 50386 ||||||||| || || |||| | | |||||| | || || || ||||| ||||| || Sbjct 71063 AAAATCGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTGGTG 71004 Query 50387 TCCCAAATCGACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATC 50446 |||| | | || | |||||||| || || || || |||||||| | || || | || Sbjct 71003 CCCCAGAGTGTCGTTAGACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATGTGGTC 70944 Query 50447 TAAATAATTTTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAAC 50506 | || ||||| || | || ||| | || | |||||| || |||| ||||| | Sbjct 70943 CATGTAGTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCGCTGAT 70884 Query 50507 GGCGCTCGTCAATTCGAATTCGCGGCCGGTGACGCGTTGAAGATCGTCCAGCATGTCGCG 50566 || ||||||||| ||| | || || | | ||| ||||| ||||| || || Sbjct 70883 AGCTGATGTCAATTCGTATTTCCTACCAGTTGAGTGAGAAAGTTCGTCAAGCATTTCACG 70824 Query 50567 CAGATCGCGAAGCAGCACAACGTA--CGTGAGTCCGTCTTTGTGAGGATCGCCGACTGCG 50624 || || | || ||||| | | | ||||||| || | || | | | Sbjct 70823 GAGTTCCTTCATGAGGTTGACGTAAACATCA--CCGTCTTC-TGGGCTTC--CAAAGGTA 70769 Query 50625 GGATTGGCGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTC 50684 || || ||||| || || || || ||||||||||| ||||| || || |||||||| ||| Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709 Query 50685 CAAGTCAGCAGAAACTCGCGTACCGATTCCACAAAAACGGCTCGTTTTTCCGCGTCGTGC 50744 || || | || ||||| || || || || || || ||| | | ||| || Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAA----GCGAGTTCTCTTG-GTCTTGT 70654 Query 50745 ATGTGAAAAA-----ATGGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGA 50799 || ||||| | ||||| | ||| |||||||| || ||||| || | | ||| | Sbjct 70653 CAGTAAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCA 70594 Query 50800 GGTGCGGGTTGGCtttttttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGT 50859 ||| || | |||| ||| | | ||||||||||||||| || |||||||| ||||| | Sbjct 70593 GGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCAT 70534 Query 50860 TCCAAGCCGAGACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACA 50919 |||||| || | || || || |||||||||| || ||||| || |||||||| || | Sbjct 70533 TCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATA 70474 Query 50920 CTTTAAAATCGGCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGG 50979 ||||||| || | || || ||| ||||| || || || | |||||| || || Sbjct 70473 CTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTT 70414 Query 50980 TTTTCAACGCGTCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAAT 51039 || || |||||| | ||| || || || ||||| || | ||||| ||||| | | Sbjct 70413 CCTTTAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGT 70354 Query 51040 GCGACAAATTGGGGGCAGGAATTTTGTCAGCGGCGAACGCACGCGCGTACACTCCCCATT 51099 | | | |||||| || | || ||| |||| | || ||| || ||||||| Sbjct 70353 GAGTTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATT 70294 Query 51100 CTACAAAATACGCGGCA 51116 | |||||||| ||| || Sbjct 70293 CCACAAAATAAGCGCCA 70277 >seq5066 Length=19128 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || |||| | || ||||| | || ||||| ||||| || ||||||||| Sbjct 18852 ATTCCACCACGAAGCCGGAGAACCAGATGTAAGGTAGATTCTTTTTGAATGTTATAATCG 18793 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | || ||||| || | ||||| |||||||| || || Sbjct 18792 GATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAAACGTTGCTGATCTGGG 18733 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||||||||| |||||||| || ||| | ||| | ||| ||||| | || Sbjct 18732 GGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTTTTCGATGGTATCGGATGGTTCA 18673 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| | ||||| || || || || ||||| || || ||||| |||||| Sbjct 18672 ACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCACGAAAATCTGCATC 18622 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAATT 45195 || || || || |||||||| |||||||| || ||| || | || || || | || Sbjct 19053 TGAAGTGTAGACTCCTTTTGAATATTATAGTC--TGATAGTGTACGACCGTCTTCAAGTT 18996 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | || || || | ||||| || || || || || |||||||||||||| |||||||| | Sbjct 18995 GCTTGCCAGCAAAGATCAAACGCTGTTGATCTGGGGGAATGCCTTCTTTGTCTTGAATCT 18936 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || ||||| || | || || |||| || |||||||| || | ||||| || | Sbjct 18935 TTGCTTTGACATTCTCGATAGTATCCGAAGGTTCAACTTCGAGCGTTATAGTTTTACCTG 18876 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| || ||||| ||||| Sbjct 18875 TAAGAGTTTTAACGAAAATCTGCAT 18851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451956525019560