Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq566 178 1e-39 seq272 156 5e-33 >seq566 Length=99533 Score = 178 bits (196), Expect = 1e-39 Identities = 627/972 (65%), Gaps = 23/972 (2%) Strand=Plus/Plus Query 98743 GGGGCTTATTTTGTAGAATGGGGTGTTTACGATCGCAAATTTCCAGCAGATAAAGTGCCT 98802 || ||||||||||| |||||||| |||||| | || || || | ||| || || Sbjct 70278 GGCGCTTATTTTGTGGAATGGGGCGTTTACCCGAGGAAGTTCCCCGTCGATCGCGTACCA 70337 Query 98803 ATCCCCAATTTGACACACCTTTTGTATGGTTTTATCCCCATTTGCGGAGGCGACGGTATA 98862 || |||||| | || |||||| ||||||||||||| || ||||| || || || || || Sbjct 70338 ATTCCCAATCTAACTCACCTTCTGTATGGTTTTATTCCAATTTGTGGTGGAGATGGCATT 70397 Query 98863 AACGACAGTCTAAAACAAGTGCCGGGATCTTTTGAGACGTTACAAAAATCGTGCGATAAG 98922 ||||||||| |||| || | ||| ||| | | | ||| || ||| | Sbjct 70398 AACGACAGTTTAAAGGAAATCGAAGGAAGTTTCCAAGCACTTCAACGTTCTTGCAGTGGT 70457 Query 98923 AGAGATGATTTCAAGGTGAGCATCCACGATATTTACGGTGCTCTACAGAAACCACAACAG 98982 | || || || || || || |||||| | | || |||||||||| || | Sbjct 70458 CGCGAGGACTTTAAAGTATCTATTCACGATCCCTGGGCAGCCTTACAGAAACCTCAGAAA 70517 Query 98983 GGTGTCTCCGATTATAACGAGCCTTACCGTGGCAATTTCGGACAGCTTATGGCCATACGT 99042 ||| | || || || || || ||| ||||| ||||| || || ||| | | Sbjct 70518 GGTCTATCATCTTGGAATGAACCATACAAAGGCAACTTCGGTCAACTGATGTC---ATTG 70574 Query 99043 AAACA---CAACCCACATCTAAAAATCCTACCCAGTATCGGTGGTTGGACTCTTAGC-GA 99098 ||||| | || | || || || || || ||| || || ||||| || || || Sbjct 70575 AAACAAGCGAGACCTGACCTGAAGATTCTTCCTTCTATTGGAGGATGGAC-ATTGGCTGA 70633 Query 99099 CCCCTTCTATTTTTTCGCCGATGATTACAAGCGCAAAGTGTTCGTAGACTCGGTTCGTGA 99158 || |||| ||||| | || | |||| | | ||||| ||||| || || Sbjct 70634 TCCGTTCTTCTTTTTTACTGACAAGACCAAGAGAACTCGCTTCGTTGACTCAGTCAAAGA 70693 Query 99159 ATTCCTACAGGTGTGGAAATTTTTCGACGGTGTAGACATCGACTGGGAGTTTCCTGGCGG 99218 ||||| || |||||||||||||| ||||| ||||| || |||||||| ||||| || Sbjct 70694 GTTCCTTCAAACCTGGAAATTTTTCGATGGTGTTGACATTGATTGGGAGTTCCCTGGTGG 70753 Query 99219 AAAGGGGGCCAACCCTGAAGTAGGAAATCCTAATGAGGACGGAAACACTTATGTCACACT 99278 || || || |||||| | |||| || || ||||| | ||| |||| || Sbjct 70754 TAAAGGCGCTAACCCTACCTTTGGAAGCCC---AGAAGACGGTGATGTTTACGTCAACCT 70810 Query 99279 TCTGCAAGAGCTTCGTTTGATGCTTGACGAATTGGGTGTGGCCAATAAACGTGT-----T 99333 || | || || ||| |||||||||||| | | || | ||| || Sbjct 70811 CATGAAGGAACTCCGTGAAATGCTTGACGAACT-----TTCTCACTCAACTGGTAGGAAA 70865 Query 99334 TACGAACTGACAAGTGCCGTGGGCGCCGGTTACGATAAAATCGACGTGGTCGATTACTCT 99393 |||||| ||||| || | |||| |||| || |||||| | || || || ||| Sbjct 70866 TACGAATTGACATCAGCTATCAGCGCTGGTTGGGACAAAATCCAGGTAGTTGACTACAGC 70925 Query 99394 ACAGCCAGTCAATATTTGGACCATGTGTTTTTAATGAGTTACGATTTTAAAGGCGCCTGG 99453 | |||| | || ||||||| | || | |||||||| || || || || || ||| Sbjct 70926 AAAGCCCAAAACTACATGGACCACATTTTCCTGATGAGTTATGACTTCAAGGGAGCTTGG 70985 Query 99454 TCCAACACCGACT-TGGGTCATCAAACACCATTGTATGCACCATCGTGGAACTCCGAAGA 99512 || ||| | ||| |||| || || ||||| || || || ||| ||||| | |||| Sbjct 70986 TCTAACGAC-ACTCTGGGGCACCAGACACCTTTATACGCTCCAGAATGGAATCCTAAAGA 71044 Query 99513 GAGATACACAACCGATTATGCGGTTAAACAGCTATTAAAGAAAAAAGTGCCTTCTCACAA 99572 | || || ||||||| || || ||| | | ||| || ||| | | || Sbjct 71045 AACTTATACTACCGATTTTGGTGTAAAATACTTGTTAGCTCAAGGTGTGAACCCGAAGAA 71104 Query 99573 GATTGTAGTGGGAGTCGCCATGTACGGCAGAGGATGGAGTGGAGTGCATGACTACAAAAA 99632 ||| | || ||||| || |||||||| | || |||| ||| || || | ||| | | Sbjct 71105 GATCATCGTCGGAGTGGCAATGTACGGACGTGGCTGGACTGGCGTCCACGGGTACGAGGA 71164 Query 99633 TAATAACGTTTTTACGGGTGTGGCCACGGGACCGGTAAAAGGCACCTGGGAAAACGGTGT 99692 || || || || || || || ||||| || || || |||||| || ||||||| Sbjct 71165 CAACAATCCCTTCACTGGCAACGCAACAGGACCAGTCAAGGGAACCTGGCAAGACGGTGT 71224 Query 99693 TGTTGATTATAG 99704 || ||||| || Sbjct 71225 AGTCGATTACAG 71236 >seq272 Length=55764 Score = 156 bits (172), Expect = 5e-33 Identities = 491/746 (66%), Gaps = 40/746 (5%) Strand=Plus/Minus Query 14169 CACATTAATTAATTACATCACCAACGAATCTAAATCGTATTCGTTTAATGCTTTAAAGTT 14228 ||| ||||| |||||||||| || || | ||| |||||||| | || || ||||| Sbjct 19616 CACTTTAATCAATTACATCATCAGTGACCAAAGATCTTATTCGTTCGACGCATTGAAGTT 19557 Query 14229 TCAACAAAAC-TATGGTCATTATGTGCAAGAAGAAGCC-ATTACCGAAGAAGATATAAAA 14286 ||||| || | | | || ||| | || || |||| ||| |||| | | || Sbjct 19556 -CAACACGACATTTAATAATACTGT-CGAGGAGGAGCCTATTGCCGACG------TTAAT 19505 Query 14287 TTTACGGCCGACGTCAAAATTGAATTTCCCGACATACTACTAGACGAAGACGACGGTGTT 14346 ||| | |||| ||||| ||||||| || || | || || || || | || | Sbjct 19504 TTTGCAACCGAACAAGAAATTCAATTTCCGGATATTATTCTCGATGATGATAAAGGAATA 19445 Query 14347 CCTGTGGTGATTCTAACAAAATTAAATTTGCTAGAGAATTTAATCTAT------ACA--- 14397 ||||| | |||||||| ||||||||||||| || || | || | | ||| Sbjct 19444 CCTGTTATAATTCTAACTGAATTAAATTTGCTGGACAAAATTATTTTTCATAAAACAAAC 19385 Query 14398 ------GATCAACT--CAACA-CGAGTTTCAGCAAATTTAAATCTACCATGGAGTGTCCA 14448 ||| || | | | | ||||||| ||||| ||||| || ||||| |||||| Sbjct 19384 GACGATGATGAAGTGTCGTCTGCCAGTTTCAATAAATTCAAATCAACAATGGATTGTCCA 19325 Query 14449 TTGTTTTTGCTCGGCAACAACGAGCTGTCACAG--TCTATTGGTTACTATTACAATCTAA 14506 | |||||| | | |||| || ||||| | || || || |||| ||||| | | Sbjct 19324 CTATTTTTGTTGAACGACAAAGA--TGTCAGTGAATCGATCGGCTACTTTTACACATTGA 19267 Query 14507 ACGCGTTTAAACAGCTGCTGGACCAT-CA-TAATTTTACGGAGCCTCGCACACGCAAACC 14564 | | | ||||| || |||| || || ||| || ||||| || ||||| | ||| Sbjct 19266 ATGTTTACAAACAATTGTTGGAGAATACAGTAAAG--ACAGAGCCGCGTACACGAAGACC 19209 Query 14565 TTTTTGCGGAGGACTGGTGTTGACAGACACCGATAGATTCGATGCATACAACGATTACGT 14624 ||| || || || || | ||| | ||| ||| || || ||||| ||| | Sbjct 19208 ATTTCATGGTGGCCTAGTACTTGTAGATTCAGATGAATTTGACAAGTATAACGACTACAT 19149 Query 14625 GATATCAGCCACGTACTTTGACGGAAAAAAGGTAAATTACAATAGTGGTTTATTTTATTA 14684 ||||||| ||||| ||||| ||||| || |||||||||| ||| |||||||||| Sbjct 19148 TTTATCAGCAACGTATTTTGAATCCAAAAAAGTGAATTACAATATTGGATTATTTTATTT 19089 Query 14685 TGTACTCTGGAAA--TTGTGTAGTGACAAAGAGTGGATGGATAAGAATGTACTTGATCAG 14742 || || |||||| || || || || ||||| ||||||||||| ||||| | || Sbjct 19088 CGTCCTGTGGAAAAATTCTG-AGAGA-AAAGAATGGATGGATAATAATGTTGTGGAAAGA 19031 Query 14743 TTTTTGAAATACGTCAAGCGTCGCATCGAGACTACCACGTGCAAGCTTAGTCTTTCTTCG 14802 ||| |||||| |||| ||| || ||| | || || | || || || || | || || Sbjct 19030 TTTAAGAAATATGTCATGCGACGTATCAAAACGACAATATGTAAAATTGGTTTGTCATCA 18971 Query 14803 CTTCCCATGGACCCACAAATGAATACGTCACTATTGACCGCTCTGTGGTATTGTGTCGAC 14862 | || | || || | || || ||||| | || || ||||||| || || || Sbjct 18970 TTACCGCTAGATCCCCCTGAAAAAACATCACTGCTAACTGCGTTGTGGTACTGCGTTGAA 18911 Query 14863 TTGTCATCTGAAATATTCAAAAATGA 14888 || || || | || ||||||||||| Sbjct 18910 TTATCTTCATATATTTTCAAAAATGA 18885 Score = 127 bits (140), Expect = 2e-24 Identities = 398/609 (65%), Gaps = 28/609 (5%) Strand=Plus/Minus Query 14303 AAATTGAATTTCCCGACATACTACTAGACGAAGACGACGGTGTTCCTGTGGTGATTCTAA 14362 ||||| ||||||| || || | || || || || | || | ||||| | ||||||| Sbjct 46997 AAATTCAATTTCCTGATATCATTCTCGATGACGATAAAGGAATACCTGTTATAATTCTAA 46938 Query 14363 CAAAATTAAATTTGCTAGAGAAT-TTAATCTATACAGATCAA---------CTCAACA-- 14410 | |||||||||||||||| || ||| ||| | | | ||| || || Sbjct 46937 CTGAATTAAATTTGCTAGACAAAATTATTCTTCATAAAACAAACGACGATGCTGAAGTGT 46878 Query 14411 ------CGAGTTTCAGCAAATTTAAATCTACCATGGAGTGTCCATTGTTTTTGCTCGGCA 14464 | ||||||| |||||| ||||| || ||||| ||||| |||||||| | | Sbjct 46877 CGTCTGCAAGTTTCAACAAATTCAAATCAACTATGGATTGTCCGCTGTTTTTGTTGAACG 46818 Query 14465 ACAACGAGCTGTCACAG--TCTATTGGTTACTATTACAATCTAAACGCGTTTAAACAGCT 14522 | || || ||||| | || || || |||| ||| | |||| | | ||||| | Sbjct 46817 ATAAAGA--TGTCAGTGATTCGATCGGCTACTTTTATACGTTAAATGTTTACAAACAATT 46760 Query 14523 GCTGGACCAT-CATAATTTTACGGAGCCTCGCACACGCAAACCTTTTTGCGGAGGACTGG 14581 | |||| || || | || ||||| || ||||| | ||| ||| || || || | Sbjct 46759 GTTGGAGAATACAGCAAAG-ACAGAGCCGCGAACACGAAGACCGTTTCATGGCGGCCTCG 46701 Query 14582 TGTTGACAGACACCGATAGATTCGATGCATACAACGATTACGTGATATCAGCCACGTACT 14641 | || || | ||| ||| || ||| ||||| ||| | |||| || || || | Sbjct 46700 TACTGGTGGATTCAGATGAATTTGACAAATATAACGACTACATTTTATCGGCAACATATT 46641 Query 14642 TTGACGGAAAAAAGGTAAATTACAATAGTGGTTTATTTTATTATGTACTCTGGAAA--TT 14699 || | ||||| || |||||||||| ||| |||||||||| || || |||||| || Sbjct 46640 TTAATTCCAAAAAAGTGAATTACAATATTGGATTATTTTATTTCGTGCTGTGGAAAAATT 46581 Query 14700 GTGTAGTGACAAAGAGTGGATGGATAAGAATGTACTTGATCAGTTTTTGAAATACGTCAA 14759 || | || |||||||||||||||| ||||| | || | ||| ||||| |||| Sbjct 46580 CTGAAA-GA-AAAGAGTGGATGGATAGAAATGTTGTGGAACGGTTCAAAAAATATGTCAT 46523 Query 14760 GCGTCGCATCGAGACTACCACGTGCAAGCTTAGTCTTTCTTCGCTTCCCATGGACCCACA 14819 ||| || || || || || || || |||| || || || || | || || | Sbjct 46522 GCGACGTATTAGTACGACAGTATGTAAAATTGGTCTGTCATCACTACCGCTAGATCCTCC 46463 Query 14820 AATGAATACGTCACTATTGACCGCTCTGTGGTATTGTGTCGACTTGTCATCTGAAATATT 14879 | || || ||||| || || || ||||||| || || || || || || || || Sbjct 46462 AGACAAAACCTCACTCTTAACTGCGTTGTGGTACTGCGTTGAATTATCTTCATGCATTTT 46403 Query 14880 CAAAAATGA 14888 ||| |||| Sbjct 46402 CAAGCATGA 46394 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 14610 ATACAACGATTACGTGATATCAGCCACGTACTTTGACGGAAAAAAGGTAAATTACAATAG 14669 ||||||||| ||| | |||| || || || ||| | ||||| || |||||||||| Sbjct 32296 ATACAACGACTACATTTTATCGGCAACATATTTTAATTCCAAAAAAGTGAATTACAATAT 32237 Query 14670 TGGTTTATTTTATTATGTACTCTGGAAA--TTGTGTAGTGACAAAGAGTGGATGGATAAG 14727 ||| |||||||||| || || |||||| || || | || |||||||||||||||| Sbjct 32236 TGGATTATTTTATTTCGTGCTGTGGAAAAATTCTGAAA-GA-AAAGAGTGGATGGATAGA 32179 Query 14728 AATGTACTTGATCAGTTTTTGAAATACGTCAAGCGTCGCATCGAGACTACCACGTGCAAG 14787 ||||| | || | ||| ||||| |||| ||| || || || || || || Sbjct 32178 AATGTTGTGGAACGGTTCAAAAAATATGTCATGCGACGTATTAGTACGACAGTATGTAAA 32119 Query 14788 CTTAGTCTTTCTTCGCTTCCCATGGACCCACAAATGAATACGTCACTATTGACCGCTCTG 14847 || |||| || || || || | || || | | || || ||||| || || || || Sbjct 32118 ATTGGTCTGTCATCACTACCGCTAGATCCTCCAGACAAAACCTCACTCTTAACTGCGTTG 32059 Query 14848 TGGTATTGTGTCGACTTGTCATCTGAAATATTCAAAAATGA 14888 ||||| || || || || || || || ||||| |||| Sbjct 32058 TGGTACTGCGTTGAATTATCTTCATGCATTTTCAAGCATGA 32018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565180032069720