Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq566 145 8e-30 seq1957 123 2e-23 >seq566 Length=99533 Score = 145 bits (160), Expect = 8e-30 Identities = 336/504 (67%), Gaps = 2/504 (0%) Strand=Plus/Minus Query 62212 GGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTC 62271 ||||| ||||| || || || || |||||||| || | ||| | || ||||| | ||| Sbjct 70768 GGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCATCGAAAAATTTC 70709 Query 62272 CACGTCTGCAGAAACTCGCGCGCCGACTCGACGAACGCGCGC-CGCGCGTTCGCGTCGTG 62330 || || || || ||||| | || || ||||| ||| | | | | || ||| Sbjct 70708 CAGGTTTGAAGGAACTCTTTGACTGAGTCAACGAA-GCGAGTTCTCTTGGTCTTGTCAGT 70650 Query 62331 CATATGGTAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGTG 62390 | | | | |||||||| | || ||||| || || || || || || | ||||| Sbjct 70649 AAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAAGAATCTTCAGGTC 70590 Query 62391 CGGGTGCGCTTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCA 62450 || ||||| || | | |||||| || ||||||||||| ||||| || || |||| Sbjct 70589 AGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGTATGGTTCATTCCA 70530 Query 62451 CGCGGTCACGCCCTTTTGCGGCTTTTGCACGGCCGCCCACGGGTCGTGCACCGCCAGTTT 62510 | | | || || || || || || | ||| ||||| || ||||| | | | ||| Sbjct 70529 AGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGTGAATAGATACTTT 70470 Query 62511 GAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTT 62570 ||||| ||||| || ||| || || || || || | ||| || || |||| ||| Sbjct 70469 AAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTTGGAAACTTCCTTCGATTTCCTT 70410 Query 62571 GAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGT 62630 | |||||||| ||||| || || || || || || | || || ||||| || || || Sbjct 70409 TAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAAAACCATACAGAAGGTGAGT 70350 Query 62631 GAGGTTGGGCACGGGCACCTTGTCGGCGGGAAACTCGCGTCCGTACACGCCCCACTCGAC 62690 || ||||| | || || ||| |||| |||| | ||| |||||||| || || Sbjct 70349 TAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCGGGTAAACGCCCCATTCCAC 70290 Query 62691 GAAATAGGCGCCCACCACCTTGCC 62714 ||||| ||||| || || || || Sbjct 70289 AAAATAAGCGCCAACTACTTTTCC 70266 >seq1957 Length=467265 Score = 123 bits (136), Expect = 2e-23 Identities = 164/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||| ||||| || || |||||||||||||| || ||||| || || | || | Sbjct 419633 CCTCATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTCTTCT 419574 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| ||||| | || || || || || ||||| | ||| || || || || |||| Sbjct 419573 TGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAAAG 419514 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | || || ||||| || || ||||| || ||||| ||| ||||| || | Sbjct 419513 CTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTCAG 419454 Query 133097 CCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 |||| |||||| || || || | || || || || || |||||| Sbjct 419453 CCTTCTTCTTT-ACACAGGGTAATGTCTCAATAGCATTAAACAAA 419410 Score = 120 bits (132), Expect = 3e-22 Identities = 122/157 (78%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGG---TGTCGT---CCTTGGCAAACATCACGCCAAAT 132603 ||||| || ||||||||||| || |||||| | ||||| |||||| || || Sbjct 421841 TAAAATTCAGCATCCAAAGTGAACACATTGTCGTTAGCTTTGGC---CATCACTCCCCAT 421785 Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 || |||||||| || |||||||||||||| ||||||||||| || ||||| || ||||| Sbjct 421784 TTCTGATATTCTCCAACCTTTTTCTCAAAGAAATTAGTTTTCCCTTCCAATGAGATGAGA 421725 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCT 132700 |||| || || || ||||| |||||||||||||| Sbjct 421724 TTCATGAAGTCGAACGGGTTCTTTGTGTTGTAGTGCT 421688 Score = 116 bits (128), Expect = 4e-21 Identities = 141/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||| ||||| || || |||||||||||||| || ||||| || || | || | Sbjct 418613 CCTCATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTCTTCT 418672 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| ||||| | || || || || || ||||| | ||| || || || || |||| Sbjct 418673 TGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCAAAAG 418732 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | || || ||||| || || ||||| || ||||| ||| ||||| || | Sbjct 418733 CTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAGTCAG 418792 Query 133097 CCTT-TTCTTT 133106 |||| |||||| Sbjct 418793 CCTTCTTCTTT 418803 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATAC 133441 |||| || || || || || || || |||||||| || ||||| |||||||||||||| Sbjct 418461 CCTTAGATAGATCAACTTCTTCAACAGTCCAAAAGGAGGCCTCTGCTTTTTTGTACATTT 418402 Query 133442 TCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACA 133501 ||| || || | || || ||||| || || ||||| |||||||||||||| | || || Sbjct 418401 GCCATATATCAGGGTACTGGATGGGGAATATAACAAAGCGGCGGGGGTTTTCTCTCAGCA 418342 Query 133502 GCGGCTCCGCTTGGGGGTCGAA 133523 | || || ||| ||||| || Sbjct 418341 GGGGTTCAAGTTGTGGGTCAAA 418320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || ||||| || |||||||| || ||||| || || |||||||| || || |||| || Sbjct 419051 GAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAGCCATAGAAACACCTAGCT 418992 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || ||||||||||||||| | || || || || || || || ||||| ||||| || Sbjct 418991 TCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGGTTCTCATTGACTATGCCATCT 418932 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATG 133343 || || || || || | || ||||| |||||||| Sbjct 418931 GATGCAGCAAAGAACGCTAATACATGCTTAATGAAATG 418894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500121150906240