Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq538 98.7 1e-15 >seq538 Length=46986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 789/1265 (62%), Gaps = 28/1265 (2%) Strand=Plus/Minus Query 111735 GCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCA 111794 |||| || |||||||| ||| |||| |||||||||| | || | || || || Sbjct 43076 GCTGCGACTCCAAGACCTCAATTGTCTTCTTGTTTCCTTGTAGCTATGAAAGATGACAGT 43017 Query 111795 ATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGT 111854 ||| | || || || | || || | ||||||| ||| || |||| ||||| ||| Sbjct 43016 ATCGAAGGAATATATGATACACTAAAACAATGTGCATTAATTTCCAAGTCAGCTGGAGGT 42957 Query 111855 ATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGT 111914 ||||| | || | ||| | ||||| || || |||| ||||||||||| Sbjct 42956 ATCGGTGTTCATGTGCATTGCATAAGAGCTAAAGGAACTTATATTGCTGGTACAAATGGG 42897 Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974 || ||||| || |||| ||| | | || | ||| ||| || | ||||| | Sbjct 42896 ATTTCCAATGGTCTTGTTCCTATGTTAAGAGTCTATAATAACACTGCCAGATATGTGGAT 42837 Query 111975 CAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| || || ||| ||| | | ||||| ||| | || || |||||||| Sbjct 42836 CAAG---GGGGTAACAAACGCCCTGGAGCATTTGCAGTGTATTTGGAACCTTGGCACGCA 42780 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| || | || || | || || || ||| | || || | || | Sbjct 42779 GATGTCTTTGAATTTTTAGATTTAAAAAAGAATACTGGTAAAGAAGAAGTACGAGCAAGA 42720 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || | |||| ||| | ||||| |||||| | || ||||| | || || | | || Sbjct 42719 GAATTATTCTATGCTTTATGGATACCAGATTTGTTTATGAAACGGGTAGAAAAAAATGAA 42660 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAG 112208 |||||| ||| | ||||| |||| || || | | ||| |||||| || Sbjct 42659 AATTGGAGTCTTATGTGTCCTCACAACTGCCCTGGATTGGCTGATTGTTGGGGTGAAGAA 42600 Query 112209 TTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGAC-TGCGACG-GTGCCAG 112266 |||||||| | || |||||| || |||||| || | | | || || | | Sbjct 42599 TTTGAAGCTTTATATGAAAAGTATGAACAAGAAAAACG--CTATGTAAAACAAGTTCGTG 42542 Query 112267 CTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGC 112326 | | | |||||||||| || | | | ||| || || || |||||||||||| Sbjct 42541 CACAGGTTTTGTGGAAAGCAATAATAGAAGCACAAGTTGAAACAGGAACACCATATATGT 42482 Query 112327 TTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTT 112386 | || ||||| | || ||| ||| ||||||||||| ||| | || || || | Sbjct 42481 TGTATAAAGATTCTTGCAACAGAAAAAGTAATCAAAAAAATCTTGGCACTATAAAATGCA 42422 Query 112387 CCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACC 112446 |||||| || |||||||| | || | |||| ||||| ||| ||||| || Sbjct 42421 GCAACCTTTGCACAGAAATTGTTGAGTATACATCACCTGATGAAGTGGCAGTGTGCAATT 42362 Query 112447 TCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAA 112506 | || || || ||| | | || ||| || | | ||| || ||| ||| | ||| Sbjct 42361 TAGCGTCCATAGCTGTTAATATGTTTGTTGA-----AAATAAA-ACTTTTAATTTTCAAA 42308 Query 112507 AACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATT 112566 || | | | ||||| |||||||| ||| |||| |||| | |||||||| || | Sbjct 42307 AATTAAAACAGGTTACTAAAACTGTTACACAAAATTTAAATAAGATTATTGATGTTAACT 42248 Query 112567 TTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 112625 | || || || ||| || || || ||||||| ||| | || ||||| ||||| Sbjct 42247 TCTATCCAGTGCCAGA-AGCAAAGAATTCGAATATGAAACATAGGCCTATTGGCATCGGT 42189 Query 112626 GTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCG 112685 || || || | || |||| ||| | | | | | ||| || ||||| Sbjct 42188 GTTCAGGGATTAGCAGATGCATTTGTGTTAATGAGATTTCCCTATGAGAGTGAAGAAGCA 42129 Query 112686 AAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCG 112745 | | | ||| | |||||||| || || || | | ||| | || || |||| Sbjct 42128 ATTTTACTTAATCAACAAATATTTGAAACTATATACTATGGAGCTTTAGAAGCTAGTTGT 42069 Query 112746 GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGG 112805 || ||||||||| || ||| || | | ||| || ||| || ||||| Sbjct 42068 GAATTGGCAGAGAAGGAAGGTGTTTACTCTAGTTATGATGGAAGTCCTGCAAGTCAAGGC 42009 Query 112806 GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGACGCTC 112863 | | |||| ||| ||||||| | || || | || || | || ||| || Sbjct 42008 ATTTTACAATATGACATGTGGG-ACAAGACTCCTA-CTGATCTGTGGGATTGGACTGCCT 41951 Query 112864 TCAAGGAACGCAT-CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCA 112922 | || ||| | ||| || | ||||||||||| |||||| | || ||||||||| Sbjct 41950 TAAAAGAAAAATTGCAA--AGCATGGTCTTCGTAATTCCCTTTTGTTAGCTCCAATGCCA 41893 Query 112923 ACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAAC 112982 || || ||||| ||||| || | || |||||||||| |||||||| | || | ||| Sbjct 41892 ACTGCTTCCACAGCACAGATACTTGGAAATAATGAATCTTTTGAACCATTTACTTCAAAC 41833 Query 112983 ATCTA 112987 || || Sbjct 41832 ATTTA 41828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620678300587920