Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq566 205 6e-48 seq5066 109 4e-19 >seq566 Length=99533 Score = 205 bits (226), Expect = 6e-48 Identities = 652/997 (65%), Gaps = 43/997 (4%) Strand=Plus/Minus Query 5564 GCTATGTTTCTATAATCCACCACACCGTTTTCCCAGGTGCCGGCAATCTTGTCG-GTCGC 5622 ||||| | ||| ||||| || ||||||| || |||||| || | || ||| || || Sbjct 71245 GCTATTTCTCTGTAATCGACTACACCGTCTTGCCAGGTTCCCTTGA-CTGGTCCTGTTGC 71187 Query 5623 CACACCGGTAAATACATTATTGTTCACCTGGTCGTGCACTCCGGACCACCCACGACCGTA 5682 || || || ||| |||| | | | |||| || || | ||| ||||| ||||| Sbjct 71186 GTTGCCAGTGAAGGGATTGTTGTCCTCGTACCCGTGGACGCCAGTCCAGCCACGTCCGTA 71127 Query 5683 CATGGCTACACCCACAATTAGCTTCTTCGATTCGACGCTCTGATTTAACAGACGCTTGAT 5742 ||| || || || || || | |||||||| | || | ||| ||||| || | Sbjct 71126 CATTGCCACTCCGACGATGATCTTCTTCGGGTTCACACCTTGAGCTAACAAGTATTTTAC 71067 Query 5743 TGAAAAATCTGTCGTGTATGTCTCGCCTGGGTTCCACGATGGAGCGTACAGAGGTGTCTG 5802 |||||| || || || || || || ||||| ||||||||| | ||||||||| Sbjct 71066 ACCAAAATCGGTAGTATAAGTTTCTTTAGGATTCCATTCTGGAGCGTATAAAGGTGTCTG 71007 Query 5803 GTGTCCCAGA--TCCGTTAACGACCAGGCACCCTTGTAGTCGTACGTCATAACAAAGATG 5860 ||| |||||| ||||| ||||| || |||||| |||| || |||| | || ||| Sbjct 71006 GTGCCCCAGAGTGTCGTTA--GACCAAGCTCCCTTGAAGTCATAACTCATCAGGAAAATG 70949 Query 5861 TGATCAAGATACCTTTGTGCGCTGGCGTAGTCGACAACGTCGATCTTGTCATGTCCCGCG 5920 || || | || |||| || || |||||| || || | ||| ||||| || ||| Sbjct 70948 TGGTCCATGTAGTTTTGGGCTTTGCTGTAGTCAACTACCTGGATTTTGTCCCAACCAGCG 70889 Query 5921 CCGATAGCACTTGTCAATT-GTAACCGTTTAC--CCCGCTTCTCGCCCAA-CTCGTCAAG 5976 | |||||| |||||||| ||| ||| | || | | | || |||||||| Sbjct 70888 CTGATAGCTGATGTCAATTCGTA----TTTCCTACCAGTTGAGTGAGAAAGTTCGTCAAG 70833 Query 5977 CATCACGCGAAGTTCCCGCAACAAAAGAGTGTACGT----ATTGCGGTCCACCTCGGCAT 6032 ||| | || |||||| || | || |||| || | || | || ||| Sbjct 70832 CATTTCACGGAGTTCCTTCATGA----GGTTGACGTAAACATCACCGT-CTTCTGGGC-- 70780 Query 6033 TACCCAACACAGGATTAGCACCCTTTCCACCCGGAAACTCCCAGTCAATGTCCACTCCGT 6092 | || || ||| ||||| || || ||||| || |||||||| |||||||| || || | Sbjct 70779 TTCCAAAGGTAGGGTTAGCGCCTTTACCACCAGGGAACTCCCAATCAATGTCAACACCAT 70720 Query 6093 CAAAGAACTTCCATGTCTCCAGAAACTCGCGGACACTTGTG---ACGAACACCTTACGTT 6149 | || || ||||| || | || ||||| ||| || | ||||| | | | Sbjct 70719 CGAAAAATTTCCAGGTTTGAAGGAACTCTTTGAC---TGAGTCAACGAAGCGAGTTCTCT 70663 Query 6150 TGGAGTCATCGTTCATAAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTA 6209 ||| | || | | ||| | |||||||| ||| ||||| || || || || || | Sbjct 70662 TGGTCTTGTCAGTAAAAAAGAAGAACGGATCAGCCAATGTCCATCCTCCAATAGAAGGAA 70603 Query 6210 GGACTGTCAACGAAGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGT 6269 | | ||| ||| | |||| | | |||||| || || ||||| || |||| Sbjct 70602 GAATCTTCAGGTCAGGTCTCGCTTGTTTCAATGACATCAGTTGACCGAAGTTGCCTTTGT 70543 Query 6270 ACGCTTCGTTGTACGCCTCAACGCCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGT 6329 | | ||| || | | | |||||||| ||||| || || || |||||| |||| Sbjct 70542 ATGGTTCATTCCAAGATGATAGACCTTTCTGAGGTTTCTGTAAGGCTGCCCAGGGATCGT 70483 Query 6330 GAATACTCACCTTGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTCAAAGGAA- 6388 ||||| || || ||||| ||||||||| ||| || || || || | |||| Sbjct 70482 GAATAGATACTTTAAAGTCCTCGCGACCACTGCAAGAACGTTGAAGTGCTT----GGAAA 70427 Query 6389 -----TTGGGAATCTGCTTGAGGGCGTCGTTTATGCCGTTACCACCACAAATTGGAATGA 6443 || | || | ||| | |||||| ||||| | ||||||||||||||||| | Sbjct 70426 CTTCCTTCG--ATTTCCTTTAAACTGTCGTTAATGCCATCTCCACCACAAATTGGAATAA 70369 Query 6444 ACCCGTACAGCAGGTGCGTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGC 6503 | || ||||| ||||| || ||||| || |||||||| || | ||| |||| || Sbjct 70368 AACCATACAGAAGGTGAGTTAGATTGGGAATTGGTACGCGATCGACGGGGAACTTCCTCG 70309 Query 6504 CATACACTCCCCACTCCACGAAATACGCACCGACGAC 6540 || || ||||| ||||| ||||| || || || || Sbjct 70308 GGTAAACGCCCCATTCCACAAAATAAGCGCCAACTAC 70272 >seq5066 Length=19128 Score = 109 bits (120), Expect = 4e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| ||||||||||| || || | | |||| |||| || ||||| ||||| ||||| Sbjct 18814 TTCTTTTTGAATGTTATAATCGGATAAGGTTCGACCATCTTCAAGCTGCTTTCCAGCAAA 18755 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | |||||||| ||| | || | || || ||||| ||||||| ||| ||| Sbjct 18754 AATCAAACGTTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACGTT 18695 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | || | ||||| || | || || || || ||||||||||||||||| Sbjct 18694 TTCGATGGTATCGGATGGTTCAACTTCTAAAGTAATAGTCTTACCCGTGAGAGTCTTCAC 18635 Query 34970 AAAGATCTGCATATT 34984 || |||||||| || Sbjct 18634 GAAAATCTGCATCTT 18620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324600915584808