Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq538 571 7e-158 seq1957 132 5e-26 seq184 100 3e-16 >seq538 Length=46986 Score = 571 bits (632), Expect = 7e-158 Identities = 1192/1777 (67%), Gaps = 26/1777 (1%) Strand=Plus/Plus Query 46974 TTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCA 47033 || || |||||||| | ||| | |||| |||| ||| || |||||||| ||||| ||| Sbjct 41441 TTATCAACAGTAAATTGAATAGCATTAGCAGCTGGTTTAGTACGTAAATAGTACATTCCA 41500 Query 47034 GTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGT 47093 || || || || | |||| |||||||||| ||| |||||||| |||| | ||| Sbjct 41501 GTTTTCAATCCCATCTTCCAAGCATAGAAATGTATAGATGTTAATTTTCCATAATTTGGT 41560 Query 47094 TCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCC 47153 || | | ||||||||||| || ||||||||||||||||| || |||||||| || ||| Sbjct 41561 TCAGCTACATGAATATTAAATGACTGACTCTGATCAATAAACGCTCCTCTATCTGCAGCC 41620 Query 47154 ATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCT 47213 || | || | | | || || ||||| ||||| || || | | | || | | Sbjct 41621 ATTTGTATAGTTGTTTTCACTGAAATTTCCCAAACTGTCTTGTATAAGTCCCTTATTTTT 41680 Query 47214 TCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 | ||| | || | ||||||| |||||||| ||| | || || ||||| | Sbjct 41681 TTTGGAATCTTTTCAATATTTTGTATAGATCCATTGTTGTGAATTATCAAATTTTTCATA 41740 Query 47271 tcatttgacca-aagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 || | ||| |||| | || ||||| | |||| |||||| | ||||||| ||| Sbjct 41741 TCTTCATCCCATAAGTCAGC-TTGGGTTAAATCTGTTAAGAGATGATGGTTAACAACTTG 41799 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 ||| || ||||||| ||| | || || || || ||| ||||||| | |||||| Sbjct 41800 AAACTCACCAGATAATACCCGGCGTTGGTAAATGTTTGAAGTAAATGGTTCAAAAGATTC 41859 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 ||||||||||| || || || || || || || ||||| | || | || | | ||| Sbjct 41860 ATTATTTCCAAGTATCTGTGCTGTGGAAGCAGTTGGCATTGGAGCTAACAAAAGGGAATT 41919 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 | | |||| ||| || | | ||||||||| ||||| | || Sbjct 41920 ACGAAGACCATGCTTTGCAATTTTTCTTTTAAGGCAGT-CCAATCCCACAGATCAGTAGG 41978 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 | | ||| | |||||||| | ||| |||| |||| ||| |||| ||| | Sbjct 41979 AGTCTTGTCCCACATGTCATATTGTAAAATGCCTTGACTTGCAGGACTTCCATCATAACT 42038 Query 47570 TTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATAT 47629 ||| ||| | | || | ||||||||| ||||| || || | ||| ||||| Sbjct 42039 AGAGTAAACACCTTCCTTCTCTGCCAATTCACAACTAGCTTCTAAAGCTCCATAGTATAT 42098 Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNN 47689 ||||||||||||| | || || |||||||| ||| | ||| | Sbjct 42099 AGTTTCAAATATTTGTTGATTAAGTAAAATTGCTTCTTCACTCTCATAGGGAAATCTCAT 42158 Query 47690 NNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATT 47749 |||| |||||| ||||| |||||||| || ||||| || ||||| | |||| Sbjct 42159 TAACACAAATGCATCTGCTAATCCCTGAACACCGATGCCAATAGGCCTATGTTTCATATT 42218 Query 47750 AGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNN 47809 ||| || |||||||| | |||||| ||| | ||| ||||| ||||||| | Sbjct 42219 CGAATTCTTTGCTTCTGGCACTGGATAGAAGTTAACATCAATAATCTTATTTAAATTTTG 42278 Query 47810 NNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTATAACAAA 47869 || | | ||||||| | ||||| ||| | |||||| |||||| Sbjct 42279 TGTAACAGTTTTAGTAACCTGTTTTAATTTTTGAAAATTAAAAGTTTTATTTTCAACAAA 42338 Query 47870 CCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTG 47929 | |||||| ||||| || |||| ||| || || || || |||| || ||||| | Sbjct 42339 CATATTAACAGCTATGGACGCTAAATTGCACACTGCCACTTCATCAGGTGATGTATACTC 42398 Query 47930 TATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNN 47989 | ||||| | || || || | ||||| ||||| || | ||||| |||||| | Sbjct 42399 AACAATTTCTGTGCAAAGGTTGCTGCATTTTATAGTGCCAAGATTTTTTTGATTACTTTT 42458 Query 47990 NTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAAT 48049 |||| || | || || || | |||| | |||||||| ||||| | || | ||| || Sbjct 42459 TCTGTTGCAAGAATCTTTATACAACATATATGGTGTTCCTGTTTCAACTTGTGCTTCTAT 42518 Query 48050 GATAGATTTCCAAACAGTCCTAGC-----CTT-TATAACAGCTCTAGCTTTATTATCATG 48103 || | |||||| | | | || ||| | | ||| |||| || || | || Sbjct 42519 TATTGCTTTCCACAAAACCTGTGCACGAACTTGTTTTACA----TAGCGTTTTTCT--TG 42572 Query 48104 TTCGTATTTAGTATATAACTTCTCAAATTCATC-CCCATACACATTATCTAACCCAGGAC 48162 ||| || || |||||| |||||||| || ||| ||| || | | || ||||| | Sbjct 42573 TTCATACTTTTCATATAAAGCTTCAAATTCTTCACCCCAACA-ATCAGCCAATCCAGGGC 42631 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 | | | ||||||||| | ||||| |||| |||| ||| | ||||||| | || Sbjct 42632 AGTTGTGAGGACACATAAGACTCCAATTTTCATTTTTTTCTACCCGTTTCATAAACAAAT 42691 Query 48223 CTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 |||||||||| | ||| ||| ||||| || || | || || |||||| || ||| ||||| Sbjct 42692 CTGGTATCCATAAAGC-ATAGAATAATTCTCTTGCTCGTACTTCTTCTTTACCAGTATTC 42750 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 |||| | || | ||| || | | ||| || ||||| ||||| ||||| | ||| | | Sbjct 42751 TTTTTTAAATCTAAAAATTCAAAGACATCTGCGTGCCAAGGTTCCAAATACACTGCAAAT 42810 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | || || ||||| ||||| |||||||| | |||||||||||| || ||||| |||||| Sbjct 42811 GCTCCAGGGCGTTTGTTACCCCCTTGATCCACATATCTGGCAGTGTTATTATAGACTCTT 42870 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 ||||| || |||| |||||| || || ||||| || || | ||||||| |||| ||||| Sbjct 42871 AACATAGGAACAAGACCATTGGAAATCCCATTTGTACCAGCAATATAAGTTCCTTTAGCT 42930 Query 48462 CTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC 48519 ||||| | | | || || ||| ||||| || || || || |||| ||||| Sbjct 42931 CTTATGCAATGCACAT--GAACACCGATACCTCCAGCTGACTTGGAAATTAATGCACATT 42988 Query 48520 GTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAAC 48579 |||| || |||||||| |||||||| ||||| |||||| ||||| || || |||||| Sbjct 42989 GTTTTAGTGTATCATATATTCCTTCGATACTGTCATCTTTCATAGCTACAAGGAAACAAG 43048 Query 48580 TAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACC 48639 ||||| ||| || ||| | | | ||| | |||||| ||||||| |||| Sbjct 43049 AAGACAATTGAGGTCTTGGAGTCGCAGCAGAAAACATTGTTGGGCTTGCATGAGTAAAAT 43108 Query 48640 ATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATAC 48699 |||| || |||||||| || || || | ||| | | ||||||||| ||||| | Sbjct 43109 ATTTTTCAGATAACAAATTGTAAGTGTTTATAGCTGCATCTATATCTTCCCCGTGTATGC 43168 Query 48700 CTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 | | || |||||||| | ||||| || |||| ||| Sbjct 43169 CAACAGCAACACGCATCAGCATATGCTGGGGTCGTTC 43205 >seq1957 Length=467265 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || || || ||||| ||||| || || || | ||||||||| || ||||| |||| Sbjct 419604 AAAGTCAATCCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCA 419545 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || |||||||| ||||| ||||| |||||||| || | | ||| || || | ||| Sbjct 419544 GAGAAGAATATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTC 419485 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 || | |||||||| || ||||| ||||||||||| |||||||| || | |||||| Sbjct 419484 TTGCTTGCAATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTACACAGGGTAATGTCTCA 419425 Query 19192 ATAGAATTAAA 19202 |||| |||||| Sbjct 419424 ATAGCATTAAA 419414 Score = 131 bits (144), Expect = 2e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 19239 ATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTA 19298 ||| || || ||| |||||| ||||| || | |||||| ||||| |||||||| || || Sbjct 419064 ATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGAAAGCCATA 419005 Query 19299 AAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATT 19358 ||||| || |||||||| | ||| ||||| |||| | ||| || | || ||||| Sbjct 419004 GAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGGTTCTCATT 418945 Query 19359 AACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC 19415 ||||| ||||| || ||||| || ||||||||||| ||||| ||||||||||| Sbjct 418944 GACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGTTTTTC 418888 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 ||||||| ||| ||||||||||| |||||||| || |||||||||||||| ||||| | | Sbjct 418459 TTAGATAGATCAACTTCTTCAACAGTCCAAAAGGAGGCCTCTGCTTTTTTGTACATTTGC 418400 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||||||||| | || || || || ||||||||||| Sbjct 418399 CATATATCAGGGTACTGGATGGGGAATATAACAAA 418365 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || || || || ||||| ||||| || || || | ||||||||| || ||||| |||| Sbjct 418642 AAAGTCAATCCTGGCATAAGTCCCCTCTTCTTGAGCCAGAATATTGATGCAAAGCTTCCA 418701 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || |||||||| ||||| ||||| |||||||| || | | ||| || || | ||| Sbjct 418702 GAGAAGAATATGCCTTCAACTGCAGCAAAAGCTACAATACGTTCACCGAAAGTTGCAGTC 418761 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTAC 19175 || | |||||||| || ||||| ||||||||||| ||||| Sbjct 418762 TTGCTTGCAATCCATTGCATAGCCCAGTCAGCCTTCTTCTTTAC 418805 >seq184 Length=348297 Score = 100 bits (110), Expect = 3e-16 Identities = 209/311 (67%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693 ||||||||| || |||||||| || || | || | || || || | || | || Sbjct 239563 ATGACTCCTGTTTTACCAATGTTAGCTGAGGCTTGCAAGTCGGTCGAAATGGCTATGAAG 239504 Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753 || | ||| ||||| || ||| | || || |||||||| ||||| | || || ||||| Sbjct 239503 AAATGTCCCAATGGCATGTTTTCCGAGATTAAATATGATGGAGAGAGAGTCCAAGTTCAT 239444 Query 136754 AAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAA 136813 || || ||||| | ||| || |||| | | | |||||||| | |||||| Sbjct 239443 AAAAAGGGAAATGAATTTAAATATTTTTCTCGTGCTCTAAAACCCGTGATGGCCCATAAA 239384 Query 136814 GTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTTTA 136873 || | | |||| || ||| | ||| |||| ||| ||| | | | | |||||| Sbjct 239383 GTCAGTCACTTTAAAGATTATCTCCCTCAAGCTTTTCCAAAAGGAGATGATTTAATTTTA 239324 Query 136874 GATTCAGAAATAGTACTAGTAGATAAAAATAA---TAAACCATTACCATTTGGCAGTTTG 136930 || ||||| | || | |||||| || | |||||||||||||||||| | |||| Sbjct 239323 GACGCAGAAGTTTTAATGGTAGATGTGAAGACCGGTAAACCATTACCATTTGGTACTTTG 239264 Query 136931 GGTATACATAA 136941 || ||||| || Sbjct 239263 GGAATACACAA 239253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562050755240040