Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melitaea_20cinxia_20[genbank_20GCA_5F000716385.1_202014-07-09] 8,261 sequences; 389,907,520 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1957 113 5e-20 >seq1957 Length=467265 Score = 113 bits (124), Expect = 5e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 37194 AAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtt 37253 |||||| |||| || |||| ||||| || || ||||||||||| | || || Sbjct 419636 AAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTC 419578 Query 37254 tttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCA 37313 || || | ||| ||||||| |||||| |||||| ||||| || ||||||||||| ||| Sbjct 419577 TTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCA 419518 Query 37314 AATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAA 37373 || ||||||| |||| ||||||||||| | | | | |||||||| | | ||| Sbjct 419517 AAAGCTACAATACGTTCACCGAAAGTTGCAGTCTTGCTTGCAATCCATTGCATAGCCCAG 419458 Query 37374 TCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGT 37425 || ||||| || ||||| | ||| ||||| || || || | ||||| Sbjct 419457 TCAGCCTTCTTCTTTACACAGGGTAATGTCTCAATAGCATTAAACAAAAAGT 419406 Score = 109 bits (120), Expect = 7e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || ||||||||||||| ||| ||||| || ||||| | |||||| ||||| |||||| Sbjct 419072 ATGTAAGTATCAATTAACAAAGAGTACATCTCTGAGTGTACATTTTCCATAGCAATCTGA 419013 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || ||||| |||||||||||||| | | || || || | |||| | | | | | Sbjct 419012 AAGCCATAGAAACACCTAGCTTCTGTCACCTGCACTTCTTGTGAAAAGCGTTCCACAAGG 418953 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 || ||||| ||||| ||||| || |||||||| || | |||| || || |||||| Sbjct 418952 TTCTCATTGACTATGCCATCTGATGCAGCAAAGAACGCTAATACATGCTTAATGAAATGT 418893 Query 37626 CTTTC 37630 |||| Sbjct 418892 TTTTC 418888 Score = 105 bits (116), Expect = 8e-18 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 37194 AAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtt 37253 |||||| |||| || |||| ||||| || || ||||||||||| | || || Sbjct 418610 AAACCT-CATCCCTTGAAATCAGCTCATTGCTGAAAGTCAATCCTGGCATAAGTCCCCTC 418668 Query 37254 tttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCA 37313 || || | ||| ||||||| |||||| |||||| ||||| || ||||||||||| ||| Sbjct 418669 TTCTTGAGCCAGAATATTGATGCAAAGCTTCCAGAGAAGAATATGCCTTCAACTGCAGCA 418728 Query 37314 AATGCTACAAGACGTGTACCGAAAGTTG 37341 || ||||||| |||| ||||||||||| Sbjct 418729 AAAGCTACAATACGTTCACCGAAAGTTG 418756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592255635886440